Variant report

Variant	rs10258391
Chromosome Location	chr7:136540595-136540596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10488595	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10488596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10488597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10954565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10954566	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11771119	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12533282	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12533822	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534748	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536507	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537831	1.00[JPT][hapmap]
rs12670040	1.00[JPT][hapmap]
rs13222744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13223210	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13223738	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13233131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13235508	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13235822	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13438539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424574	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17409631	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17409769	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17487790	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17494540	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17494589	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs36016356	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7791239	0.84[YRI][hapmap]
rs7811987	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136540200-136541000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:136540400-136540800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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