Variant report
| Variant | rs7785651 |
|---|---|
| Chromosome Location | chr7:136528142-136528143 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238488 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10258391 | 0.87[ASN][1000 genomes] |
| rs10488595 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10488596 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10488597 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10954565 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10954566 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11771119 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12533282 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12533822 | 0.87[ASN][1000 genomes] |
| rs12534748 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12536507 | 0.87[ASN][1000 genomes] |
| rs12537831 | 1.00[JPT][hapmap] |
| rs12670040 | 1.00[JPT][hapmap] |
| rs13222744 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13223210 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13223738 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13233131 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13235508 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13235822 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13438539 | 0.87[ASN][1000 genomes] |
| rs1424574 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17409631 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17409769 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17487790 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17494540 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17494589 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs36016356 | 0.87[ASN][1000 genomes] |
| rs6957496 | 0.82[LWK][hapmap] |
| rs7797223 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7811987 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv971220 | chr7:136508557-136535847 | Active TSS Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848748 | chr7:136512449-136534763 | Active TSS Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7785651 | PLXNA4 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
