Variant report

Variant	rs10258448
Chromosome Location	chr7:21842402-21842403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1011950	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1018918	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs10226098	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10226244	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10230246	0.96[CEU][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10233760	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10239296	0.87[CEU][hapmap]
rs10254975	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10255013	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10256263	0.86[CEU][hapmap]
rs10270774	0.92[CEU][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10276109	0.80[AFR][1000 genomes]
rs10277757	0.83[CEU][hapmap]
rs10950875	0.91[CEU][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10950878	0.87[CEU][hapmap]
rs10950879	0.84[CEU][hapmap]
rs12700308	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs13231851	0.88[CEU][hapmap]
rs17145488	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1962775	0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1962776	0.88[CEU][hapmap];0.88[CHB][hapmap]
rs1974509	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2014193	0.87[CEU][hapmap];0.89[CHB][hapmap]
rs2072093	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2189023	0.87[CEU][hapmap]
rs2214325	0.88[CEU][hapmap]
rs2214326	0.87[CEU][hapmap]
rs34540475	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35471448	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35922142	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3735522	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4141347	0.87[CEU][hapmap]
rs4582443	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6461602	0.86[EUR][1000 genomes]
rs6954167	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6954728	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6969900	0.87[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7780479	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7780746	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7787438	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7788531	0.91[CEU][hapmap];0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7792944	0.87[CEU][hapmap];0.88[CHB][hapmap]
rs7801909	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7803777	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804316	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9638792	0.80[EUR][1000 genomes]
rs9639398	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21834400-21848600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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