Variant report
| Variant | rs9638792 |
|---|---|
| Chromosome Location | chr7:21861579-21861580 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1011950 | 0.85[EUR][1000 genomes] |
| rs10226098 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10226244 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10230246 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10233760 | 0.83[EUR][1000 genomes] |
| rs10254975 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10255013 | 0.83[EUR][1000 genomes] |
| rs10258448 | 0.80[EUR][1000 genomes] |
| rs10269472 | 0.90[AFR][1000 genomes] |
| rs10270774 | 0.84[EUR][1000 genomes] |
| rs10807808 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10950875 | 0.85[EUR][1000 genomes] |
| rs17145488 | 0.83[EUR][1000 genomes] |
| rs3735522 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4582443 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6461602 | 0.90[EUR][1000 genomes] |
| rs6954167 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6954728 | 0.89[EUR][1000 genomes] |
| rs6969900 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7780026 | 0.86[AFR][1000 genomes] |
| rs7780479 | 0.83[EUR][1000 genomes] |
| rs7780746 | 0.91[EUR][1000 genomes] |
| rs7781044 | 0.86[AFR][1000 genomes] |
| rs7787438 | 0.83[EUR][1000 genomes] |
| rs7788531 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7801909 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7803777 | 0.80[EUR][1000 genomes] |
| rs7804316 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9639398 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv933320 | chr7:21840543-21882825 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21860400-21882200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
