Variant report

Variant	rs6461602
Chromosome Location	chr7:21844880-21844881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011950	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10226098	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10226244	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10230246	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10233760	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10254975	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10255013	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10258448	0.86[EUR][1000 genomes]
rs10270774	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10807808	0.89[EUR][1000 genomes]
rs10950875	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17145488	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1974509	0.81[EUR][1000 genomes]
rs2072093	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34540475	0.82[EUR][1000 genomes]
rs35471448	0.82[EUR][1000 genomes]
rs35922142	0.82[EUR][1000 genomes]
rs3735522	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4582443	0.91[EUR][1000 genomes]
rs6954167	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6954728	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969900	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7780479	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7780746	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7787438	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7788531	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7801909	0.90[EUR][1000 genomes]
rs7803777	0.86[EUR][1000 genomes]
rs7804316	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9638792	0.90[EUR][1000 genomes]
rs9639398	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21834400-21848600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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