Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55188935..55189678-chr4:55232967..55233845,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10016644	1.00[EUR][1000 genomes]
rs10032723	1.00[EUR][1000 genomes]
rs1025932	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1036969	1.00[EUR][1000 genomes]
rs10746546	1.00[EUR][1000 genomes]
rs1156182	1.00[EUR][1000 genomes]
rs11940626	1.00[EUR][1000 genomes]
rs12508708	1.00[EUR][1000 genomes]
rs1354959	1.00[EUR][1000 genomes]
rs1492764	1.00[EUR][1000 genomes]
rs1507960	1.00[EUR][1000 genomes]
rs1507967	1.00[EUR][1000 genomes]
rs1507969	1.00[EUR][1000 genomes]
rs1507975	1.00[EUR][1000 genomes]
rs1562057	1.00[EUR][1000 genomes]
rs1867403	0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1976222	1.00[EUR][1000 genomes]
rs2135969	1.00[EUR][1000 genomes]
rs2412562	1.00[EUR][1000 genomes]
rs2412580	1.00[EUR][1000 genomes]
rs2899006	1.00[EUR][1000 genomes]
rs2899007	1.00[EUR][1000 genomes]
rs4864885	1.00[EUR][1000 genomes]
rs4864886	1.00[EUR][1000 genomes]
rs4864888	1.00[EUR][1000 genomes]
rs56744789	1.00[EUR][1000 genomes]
rs59971610	1.00[EUR][1000 genomes]
rs6812224	1.00[EUR][1000 genomes]
rs6841931	1.00[EUR][1000 genomes]
rs6851205	1.00[EUR][1000 genomes]
rs6855353	1.00[EUR][1000 genomes]
rs73148424	1.00[EUR][1000 genomes]
rs73150417	1.00[EUR][1000 genomes]
rs7356494	1.00[EUR][1000 genomes]
rs7661226	1.00[EUR][1000 genomes]
rs925139	1.00[EUR][1000 genomes]
rs931914	1.00[EUR][1000 genomes]
rs9999573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55231800-55235800	Enhancers	Fetal Stomach	stomach
2	chr4:55232800-55234600	Enhancers	Stomach Smooth Muscle	stomach
3	chr4:55232800-55235000	Enhancers	Psoas Muscle	Psoas
4	chr4:55233000-55233800	Weak transcription	Left Ventricle	heart
5	chr4:55233200-55234400	Weak transcription	Right Ventricle	heart
6	chr4:55233400-55235000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:55233600-55233800	Enhancers	Brain Hippocampus Middle	brain
8	chr4:55233600-55234400	Enhancers	Lung	lung
9	chr4:55233600-55235400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:55233600-55235800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:55233600-55235800	Enhancers	Fetal Muscle Leg	muscle

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