Variant report

Variant	rs4864885
Chromosome Location	chr4:55268460-55268461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10016644	1.00[EUR][1000 genomes]
rs10032723	1.00[EUR][1000 genomes]
rs1025931	1.00[EUR][1000 genomes]
rs1025932	1.00[EUR][1000 genomes]
rs1036969	1.00[EUR][1000 genomes]
rs10746546	1.00[EUR][1000 genomes]
rs1156182	1.00[EUR][1000 genomes]
rs11940626	1.00[EUR][1000 genomes]
rs12508708	1.00[EUR][1000 genomes]
rs1354959	1.00[EUR][1000 genomes]
rs1492764	1.00[EUR][1000 genomes]
rs1507960	1.00[EUR][1000 genomes]
rs1507967	1.00[EUR][1000 genomes]
rs1507969	1.00[EUR][1000 genomes]
rs1507975	1.00[EUR][1000 genomes]
rs1562057	1.00[EUR][1000 genomes]
rs1867403	1.00[EUR][1000 genomes]
rs1976222	1.00[EUR][1000 genomes]
rs2135969	1.00[EUR][1000 genomes]
rs218272	1.00[EUR][1000 genomes]
rs2412562	1.00[EUR][1000 genomes]
rs2412580	1.00[EUR][1000 genomes]
rs2703482	1.00[EUR][1000 genomes]
rs2703483	1.00[EUR][1000 genomes]
rs2899006	1.00[EUR][1000 genomes]
rs2899007	1.00[EUR][1000 genomes]
rs4864886	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4864888	1.00[EUR][1000 genomes]
rs56744789	1.00[EUR][1000 genomes]
rs59971610	1.00[EUR][1000 genomes]
rs6812224	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6841931	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6851205	1.00[EUR][1000 genomes]
rs6855353	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73148424	1.00[EUR][1000 genomes]
rs73150417	1.00[EUR][1000 genomes]
rs7356494	1.00[EUR][1000 genomes]
rs7661226	1.00[EUR][1000 genomes]
rs925139	1.00[EUR][1000 genomes]
rs931914	1.00[EUR][1000 genomes]
rs9999573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv4344	chr4:55260607-55305235	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55266800-55269200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:55267200-55269200	Weak transcription	Ovary	ovary
3	chr4:55267200-55270800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:55267400-55269200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:55267400-55269200	Weak transcription	NHEK	skin
6	chr4:55267600-55269000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:55267600-55269200	Weak transcription	Brain Angular Gyrus	brain
8	chr4:55267600-55275200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:55267800-55269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:55267800-55269000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:55267800-55269200	Weak transcription	Adipose Nuclei	Adipose
12	chr4:55267800-55269200	Weak transcription	Brain Anterior Caudate	brain
13	chr4:55268000-55269000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:55268000-55269400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:55268400-55268800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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