Variant report
| Variant | rs1867403 |
|---|---|
| Chromosome Location | chr4:55239416-55239417 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr4:55239175-55239475 | HepG2 | liver: | n/a | chr4:55239308-55239323 |
| 2 | MAFF | chr4:55239261-55239461 | HepG2 | liver: | n/a | chr4:55239307-55239325 |
| 3 | MAFK | chr4:55239172-55239477 | HepG2 | liver: | n/a | chr4:55239308-55239323 |
| 4 | MAFK | chr4:55239163-55239471 | IMR90 | lung: | n/a | chr4:55239308-55239323 |
| 5 | MAFK | chr4:55239171-55239433 | H1-hESC | embryonic stem cell: | n/a | chr4:55239308-55239323 |
| 6 | MAFF | chr4:55239154-55239520 | K562 | blood: | n/a | chr4:55239307-55239325 |
| 7 | MAFK | chr4:55239172-55239483 | K562 | blood: | n/a | chr4:55239308-55239323 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248518 | TF binding region |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10016644 | 1.00[EUR][1000 genomes] |
| rs10032723 | 1.00[EUR][1000 genomes] |
| rs1025931 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1025932 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1036969 | 1.00[EUR][1000 genomes] |
| rs10746546 | 1.00[EUR][1000 genomes] |
| rs1156182 | 1.00[EUR][1000 genomes] |
| rs11940626 | 1.00[EUR][1000 genomes] |
| rs12508708 | 1.00[EUR][1000 genomes] |
| rs1354959 | 1.00[EUR][1000 genomes] |
| rs1492764 | 1.00[EUR][1000 genomes] |
| rs1507960 | 1.00[EUR][1000 genomes] |
| rs1507967 | 1.00[EUR][1000 genomes] |
| rs1507969 | 1.00[EUR][1000 genomes] |
| rs1507975 | 1.00[EUR][1000 genomes] |
| rs1562057 | 1.00[EUR][1000 genomes] |
| rs1976222 | 1.00[EUR][1000 genomes] |
| rs2135969 | 1.00[EUR][1000 genomes] |
| rs218272 | 1.00[EUR][1000 genomes] |
| rs2412562 | 1.00[EUR][1000 genomes] |
| rs2412580 | 1.00[EUR][1000 genomes] |
| rs2899006 | 1.00[EUR][1000 genomes] |
| rs2899007 | 1.00[EUR][1000 genomes] |
| rs4864885 | 1.00[EUR][1000 genomes] |
| rs4864886 | 1.00[EUR][1000 genomes] |
| rs4864888 | 1.00[EUR][1000 genomes] |
| rs56744789 | 1.00[EUR][1000 genomes] |
| rs59971610 | 1.00[EUR][1000 genomes] |
| rs6812224 | 1.00[EUR][1000 genomes] |
| rs6841931 | 1.00[EUR][1000 genomes] |
| rs6851205 | 1.00[EUR][1000 genomes] |
| rs6855353 | 1.00[EUR][1000 genomes] |
| rs73148424 | 1.00[EUR][1000 genomes] |
| rs73150417 | 1.00[EUR][1000 genomes] |
| rs7356494 | 1.00[EUR][1000 genomes] |
| rs7661226 | 1.00[EUR][1000 genomes] |
| rs925139 | 1.00[EUR][1000 genomes] |
| rs931914 | 1.00[EUR][1000 genomes] |
| rs9999573 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008793 | chr4:55060925-55535807 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv537098 | chr4:55060925-55535807 | Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv999400 | chr4:55143598-55776995 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
