Variant report

Variant	rs10259495
Chromosome Location	chr7:18725683-18725684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10229062	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10276216	0.82[AMR][1000 genomes]
rs1178102	0.84[CHB][hapmap]
rs12669789	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs17139571	0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17139630	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17139658	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17139675	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs17150245	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs2269752	0.91[JPT][hapmap];0.85[AMR][1000 genomes]
rs2285439	0.82[AMR][1000 genomes]
rs2285440	0.95[JPT][hapmap];0.89[AMR][1000 genomes]
rs4484585	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs58397191	0.81[EUR][1000 genomes]
rs6973548	0.91[JPT][hapmap]
rs73067100	0.82[AMR][1000 genomes]
rs73069011	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
3	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
4	chr7:18715400-18732800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:18716200-18733600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:18723000-18726200	Strong transcription	Primary B cells from cord blood	blood
7	chr7:18723200-18732800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:18723400-18732600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:18724400-18726200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:18725200-18728800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:18725400-18726000	Enhancers	Osteobl	bone
12	chr7:18725400-18726200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:18725400-18726200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:18725400-18726400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:18725600-18725800	Enhancers	NH-A	brain
16	chr7:18725600-18726000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr7:18725600-18726000	Enhancers	HMEC	breast
18	chr7:18725600-18726200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:18725600-18726200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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