Variant report

Variant	rs17139675
Chromosome Location	chr7:18733748-18733749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10229062	0.95[JPT][hapmap]
rs10259495	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1178101	0.82[JPT][hapmap]
rs1178102	0.81[JPT][hapmap]
rs1178111	0.80[CHB][hapmap]
rs1182736	0.82[JPT][hapmap]
rs12669789	0.87[CEU][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs17139571	0.95[JPT][hapmap]
rs17139630	1.00[JPT][hapmap]
rs17139658	0.87[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs17150245	0.95[JPT][hapmap]
rs2269752	0.95[JPT][hapmap]
rs2285440	0.90[JPT][hapmap]
rs4484585	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6973548	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
3	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
4	chr7:18726000-18736400	Weak transcription	NH-A	brain
5	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
6	chr7:18732400-18734000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:18732800-18733800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:18732800-18733800	Enhancers	NHDF-Ad	bronchial
9	chr7:18732800-18734000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:18732800-18734000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:18733000-18733800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:18733000-18734000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:18733400-18733800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:18733600-18734200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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