Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10229062	0.81[CHD][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10259495	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs10486291	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs1178101	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1178102	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1182736	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12669789	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1633787	0.82[CEU][hapmap]
rs17139571	0.82[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17139630	1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes]
rs17139658	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17139675	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs17150245	0.95[JPT][hapmap]
rs2157847	0.82[CEU][hapmap]
rs2269752	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2285437	0.85[MEX][hapmap]
rs2285440	0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs3801985	0.82[CEU][hapmap]
rs3814991	0.84[MEX][hapmap]
rs6973548	0.95[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes]
rs73069011	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18645400-18721000	Weak transcription	Psoas Muscle	Psoas
2	chr7:18678400-18721200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
5	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
6	chr7:18715400-18732800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:18715800-18722800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:18715800-18723000	Weak transcription	Primary B cells from cord blood	blood
9	chr7:18716200-18722800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:18716200-18733600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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