Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1178101	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1178102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1178103	0.94[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1178104	0.83[EUR][1000 genomes]
rs1178105	0.87[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs1178107	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs1178108	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs1178109	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs1178110	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs1178112	0.81[CEU][hapmap];0.83[CHB][hapmap];1.00[AFR][1000 genomes]
rs1178113	0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs1178116	0.86[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs1178118	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1178119	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs1178120	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12669789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17139630	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs17139658	0.81[JPT][hapmap]
rs17139675	0.82[JPT][hapmap]
rs17150245	0.81[JPT][hapmap]
rs4484585	0.89[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
3	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
4	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
5	chr7:18737800-18738400	Enhancers	Fetal Intestine Large	intestine
6	chr7:18737800-18739000	Enhancers	Fetal Intestine Small	intestine

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