Variant report

Variant	rs1178118
Chromosome Location	chr7:18751998-18751999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1178101	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1178102	0.88[CEU][hapmap];0.87[CHD][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs1178103	0.94[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1178104	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1178105	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1178107	0.94[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1178108	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1178109	0.94[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1178110	0.94[CEU][hapmap];0.88[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1178111	0.88[CEU][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs1178112	0.94[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1178113	0.93[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1178116	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1178119	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1178120	0.94[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1182736	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11982882	0.85[LWK][hapmap]
rs12669789	0.90[CHD][hapmap]
rs7812153	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv606359	chr7:18751998-18787563	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
2	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
3	chr7:18748000-18788600	Weak transcription	Left Ventricle	heart
4	chr7:18751600-18755600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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