Variant report

Variant	rs11982882
Chromosome Location	chr7:18750453-18750454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10240305	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10241413	1.00[EUR][1000 genomes]
rs10243449	1.00[EUR][1000 genomes]
rs10247766	1.00[EUR][1000 genomes]
rs11505303	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1178118	0.85[LWK][hapmap]
rs11970990	0.85[ASN][1000 genomes]
rs17139554	1.00[JPT][hapmap]
rs17139557	1.00[GIH][hapmap]
rs17139619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17150249	1.00[JPT][hapmap]
rs183325	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs212667	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28412143	1.00[EUR][1000 genomes]
rs3852248	1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605958	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58820211	1.00[EUR][1000 genomes]
rs59508709	1.00[EUR][1000 genomes]
rs61356214	0.83[ASN][1000 genomes]
rs61710852	1.00[EUR][1000 genomes]
rs6968715	1.00[GIH][hapmap]
rs73309431	1.00[EUR][1000 genomes]
rs73309436	1.00[EUR][1000 genomes]
rs73309439	1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	1.00[EUR][1000 genomes]
rs73309462	1.00[EUR][1000 genomes]
rs73309467	1.00[EUR][1000 genomes]
rs73309471	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	1.00[EUR][1000 genomes]
rs73309579	1.00[EUR][1000 genomes]
rs73309582	1.00[EUR][1000 genomes]
rs73309583	1.00[EUR][1000 genomes]
rs73309585	1.00[EUR][1000 genomes]
rs73311460	1.00[EUR][1000 genomes]
rs73311471	1.00[EUR][1000 genomes]
rs73311474	1.00[EUR][1000 genomes]
rs73311499	1.00[EUR][1000 genomes]
rs73313258	1.00[EUR][1000 genomes]
rs73313265	1.00[EUR][1000 genomes]
rs73313268	1.00[EUR][1000 genomes]
rs73313274	1.00[EUR][1000 genomes]
rs73313277	1.00[EUR][1000 genomes]
rs73313283	1.00[EUR][1000 genomes]
rs73313295	1.00[EUR][1000 genomes]
rs73313298	1.00[EUR][1000 genomes]
rs73313299	1.00[EUR][1000 genomes]
rs73313328	1.00[EUR][1000 genomes]
rs73313352	1.00[EUR][1000 genomes]
rs73313388	1.00[EUR][1000 genomes]
rs73313400	1.00[EUR][1000 genomes]
rs73313402	1.00[EUR][1000 genomes]
rs73315005	1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[EUR][1000 genomes]
rs73315010	1.00[EUR][1000 genomes]
rs73315435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315440	0.80[AFR][1000 genomes]
rs73315444	0.95[AFR][1000 genomes]
rs7777856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7812153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs812395	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
2	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
3	chr7:18748000-18788600	Weak transcription	Left Ventricle	heart
4	chr7:18748400-18751000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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