Variant report

Variant	rs73309467
Chromosome Location	chr7:18656692-18656693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10216127	1.00[EUR][1000 genomes]
rs10225505	1.00[EUR][1000 genomes]
rs10227283	1.00[EUR][1000 genomes]
rs10240305	1.00[EUR][1000 genomes]
rs10241413	1.00[EUR][1000 genomes]
rs10243449	1.00[EUR][1000 genomes]
rs10247766	1.00[EUR][1000 genomes]
rs11982882	1.00[EUR][1000 genomes]
rs28412143	1.00[EUR][1000 genomes]
rs3852248	1.00[EUR][1000 genomes]
rs4605958	1.00[EUR][1000 genomes]
rs58820211	1.00[EUR][1000 genomes]
rs59508709	1.00[EUR][1000 genomes]
rs61710852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309431	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309462	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309546	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	1.00[EUR][1000 genomes]
rs73309579	1.00[EUR][1000 genomes]
rs73309582	1.00[EUR][1000 genomes]
rs73309583	1.00[EUR][1000 genomes]
rs73309585	1.00[EUR][1000 genomes]
rs73311460	1.00[EUR][1000 genomes]
rs73311471	1.00[EUR][1000 genomes]
rs73311474	1.00[EUR][1000 genomes]
rs73311499	1.00[EUR][1000 genomes]
rs73313258	1.00[EUR][1000 genomes]
rs73313265	1.00[EUR][1000 genomes]
rs73313268	1.00[EUR][1000 genomes]
rs73313274	1.00[EUR][1000 genomes]
rs73313277	1.00[EUR][1000 genomes]
rs73313283	1.00[EUR][1000 genomes]
rs73313295	1.00[EUR][1000 genomes]
rs73313298	1.00[EUR][1000 genomes]
rs73313299	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313328	1.00[EUR][1000 genomes]
rs73313352	1.00[EUR][1000 genomes]
rs73313388	1.00[EUR][1000 genomes]
rs73313400	1.00[EUR][1000 genomes]
rs73313402	1.00[EUR][1000 genomes]
rs73315005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73315435	1.00[EUR][1000 genomes]
rs7812153	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18641200-18670800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:18641400-18663400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:18641400-18687600	Weak transcription	Fetal Heart	heart
4	chr7:18644800-18666600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:18644800-18678000	Weak transcription	Fetal Brain Male	brain
6	chr7:18645200-18659000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:18645200-18677800	Weak transcription	NHDF-Ad	bronchial
8	chr7:18645200-18678200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:18645200-18687200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:18645200-18708000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:18645400-18661600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:18645400-18662400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:18645400-18686600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:18645400-18687400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:18645400-18687800	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:18645400-18721000	Weak transcription	Psoas Muscle	Psoas
17	chr7:18645600-18676800	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr7:18645800-18659000	Weak transcription	HSMMtube	muscle
19	chr7:18645800-18662800	Weak transcription	Brain Germinal Matrix	brain
20	chr7:18645800-18663200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:18645800-18663400	Weak transcription	Left Ventricle	heart
22	chr7:18645800-18684400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:18645800-18687400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:18645800-18687400	Weak transcription	Fetal Muscle Leg	muscle
25	chr7:18645800-18706000	Weak transcription	HMEC	breast
26	chr7:18646000-18658800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:18646000-18674000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:18646000-18678000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:18646000-18678000	Weak transcription	Fetal Brain Female	brain
30	chr7:18646000-18687400	Weak transcription	NHEK	skin
31	chr7:18646000-18692400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr7:18647000-18657800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:18647000-18661400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:18647200-18665600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:18647200-18665800	Weak transcription	HSMM	muscle
36	chr7:18647200-18687800	Weak transcription	NH-A	brain
37	chr7:18649200-18675200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:18649200-18687400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:18650400-18659400	Weak transcription	Aorta	Aorta
40	chr7:18652000-18677600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:18652200-18662200	Weak transcription	Brain Substantia Nigra	brain
42	chr7:18652400-18668000	Strong transcription	Primary B cells from cord blood	blood
43	chr7:18652800-18671800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr7:18654400-18670600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:18656000-18706000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links