Variant report

Variant	rs73309579
Chromosome Location	chr7:18609102-18609103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10216127	1.00[EUR][1000 genomes]
rs10225505	1.00[EUR][1000 genomes]
rs10227283	1.00[EUR][1000 genomes]
rs10240305	1.00[EUR][1000 genomes]
rs10241413	1.00[EUR][1000 genomes]
rs10243449	1.00[EUR][1000 genomes]
rs10247766	1.00[EUR][1000 genomes]
rs11982882	1.00[EUR][1000 genomes]
rs28412143	1.00[EUR][1000 genomes]
rs28593745	1.00[EUR][1000 genomes]
rs3852248	1.00[EUR][1000 genomes]
rs4605958	1.00[EUR][1000 genomes]
rs58820211	1.00[EUR][1000 genomes]
rs59508709	1.00[EUR][1000 genomes]
rs61710852	1.00[EUR][1000 genomes]
rs73309431	1.00[EUR][1000 genomes]
rs73309436	1.00[EUR][1000 genomes]
rs73309439	1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	1.00[EUR][1000 genomes]
rs73309462	1.00[EUR][1000 genomes]
rs73309467	1.00[EUR][1000 genomes]
rs73309471	1.00[EUR][1000 genomes]
rs73309546	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309582	1.00[EUR][1000 genomes]
rs73309583	1.00[EUR][1000 genomes]
rs73309585	1.00[EUR][1000 genomes]
rs73311460	1.00[EUR][1000 genomes]
rs73311471	1.00[EUR][1000 genomes]
rs73311474	1.00[EUR][1000 genomes]
rs73311499	1.00[EUR][1000 genomes]
rs73313258	1.00[EUR][1000 genomes]
rs73313265	1.00[EUR][1000 genomes]
rs73313268	1.00[EUR][1000 genomes]
rs73313274	1.00[EUR][1000 genomes]
rs73313277	1.00[EUR][1000 genomes]
rs73313283	1.00[EUR][1000 genomes]
rs73313295	1.00[EUR][1000 genomes]
rs73313298	1.00[EUR][1000 genomes]
rs73313299	1.00[EUR][1000 genomes]
rs73313328	1.00[EUR][1000 genomes]
rs73313352	1.00[EUR][1000 genomes]
rs73313388	1.00[EUR][1000 genomes]
rs73313400	1.00[EUR][1000 genomes]
rs73313402	1.00[EUR][1000 genomes]
rs73315005	1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[EUR][1000 genomes]
rs73315010	1.00[EUR][1000 genomes]
rs73315435	1.00[EUR][1000 genomes]
rs7812153	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv516893	chr7:18601365-18614519	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18581600-18620200	Weak transcription	HSMMtube	muscle
2	chr7:18596800-18612600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:18598200-18610200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:18598600-18613000	Weak transcription	Spleen	Spleen
5	chr7:18599000-18613200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:18599000-18613200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:18600400-18613200	Weak transcription	Right Ventricle	heart
8	chr7:18600600-18613200	Weak transcription	Left Ventricle	heart
9	chr7:18600600-18617600	Weak transcription	Psoas Muscle	Psoas
10	chr7:18601000-18610200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:18601600-18609600	Weak transcription	Fetal Heart	heart
12	chr7:18601600-18613800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:18604800-18610200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:18605000-18613000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:18605200-18612400	Weak transcription	Brain Angular Gyrus	brain
16	chr7:18605200-18613000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr7:18605200-18613000	Weak transcription	Right Atrium	heart
18	chr7:18605400-18610200	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:18605400-18610200	Weak transcription	Fetal Brain Male	brain
20	chr7:18605400-18620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:18606000-18610200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:18606600-18610200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:18606800-18610200	Weak transcription	Stomach Mucosa	stomach
24	chr7:18606800-18610400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:18606800-18610800	Weak transcription	Aorta	Aorta
26	chr7:18606800-18613000	Weak transcription	Gastric	stomach
27	chr7:18606800-18613200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr7:18606800-18616000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:18606800-18616800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:18606800-18620600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:18606800-18631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:18607000-18610200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:18607000-18611400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:18607000-18614400	Weak transcription	HMEC	breast
35	chr7:18607000-18615800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:18607000-18630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:18607200-18611000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:18608200-18610200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:18608600-18609200	Weak transcription	Primary B cells from cord blood	blood
40	chr7:18609000-18609600	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links