Variant report

Variant	rs73313268
Chromosome Location	chr7:18623152-18623153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10216127	1.00[EUR][1000 genomes]
rs10225505	1.00[EUR][1000 genomes]
rs10227283	1.00[EUR][1000 genomes]
rs10240305	1.00[EUR][1000 genomes]
rs10241413	1.00[EUR][1000 genomes]
rs10243449	1.00[EUR][1000 genomes]
rs10247766	1.00[EUR][1000 genomes]
rs11982882	1.00[EUR][1000 genomes]
rs28412143	1.00[EUR][1000 genomes]
rs3852248	1.00[EUR][1000 genomes]
rs4605958	1.00[EUR][1000 genomes]
rs58820211	1.00[EUR][1000 genomes]
rs59508709	1.00[EUR][1000 genomes]
rs61710852	1.00[EUR][1000 genomes]
rs73309431	1.00[EUR][1000 genomes]
rs73309436	1.00[EUR][1000 genomes]
rs73309439	1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	1.00[EUR][1000 genomes]
rs73309462	1.00[EUR][1000 genomes]
rs73309467	1.00[EUR][1000 genomes]
rs73309471	1.00[EUR][1000 genomes]
rs73309546	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	1.00[EUR][1000 genomes]
rs73309579	1.00[EUR][1000 genomes]
rs73309582	1.00[EUR][1000 genomes]
rs73309583	1.00[EUR][1000 genomes]
rs73309585	1.00[EUR][1000 genomes]
rs73311460	1.00[EUR][1000 genomes]
rs73311471	1.00[EUR][1000 genomes]
rs73311474	1.00[EUR][1000 genomes]
rs73311499	1.00[EUR][1000 genomes]
rs73313258	1.00[EUR][1000 genomes]
rs73313265	1.00[EUR][1000 genomes]
rs73313274	1.00[EUR][1000 genomes]
rs73313277	1.00[EUR][1000 genomes]
rs73313283	1.00[EUR][1000 genomes]
rs73313295	1.00[EUR][1000 genomes]
rs73313298	1.00[EUR][1000 genomes]
rs73313299	1.00[EUR][1000 genomes]
rs73313328	1.00[EUR][1000 genomes]
rs73313352	1.00[EUR][1000 genomes]
rs73313388	1.00[EUR][1000 genomes]
rs73313400	1.00[EUR][1000 genomes]
rs73313402	1.00[EUR][1000 genomes]
rs73315005	1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[EUR][1000 genomes]
rs73315010	1.00[EUR][1000 genomes]
rs73315435	1.00[EUR][1000 genomes]
rs7812153	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762656	chr7:18620004-18625610	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18606800-18631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:18607000-18630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:18610600-18629800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:18610800-18629600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:18611600-18633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:18613200-18633200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:18613600-18624800	Weak transcription	Left Ventricle	heart
8	chr7:18613600-18633200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr7:18614200-18633200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:18614400-18624800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr7:18614400-18630000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:18614600-18631200	Weak transcription	Fetal Stomach	stomach
13	chr7:18614600-18633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:18614600-18640400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:18614600-18640400	Weak transcription	Spleen	Spleen
16	chr7:18614600-18644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:18616200-18630000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:18617000-18640400	Weak transcription	Brain Angular Gyrus	brain
19	chr7:18617200-18629800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:18617400-18624200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr7:18618400-18641000	Weak transcription	Psoas Muscle	Psoas
22	chr7:18618800-18624800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:18620600-18623600	Enhancers	Fetal Heart	heart
24	chr7:18620800-18633200	Weak transcription	Adipose Nuclei	Adipose
25	chr7:18621000-18629600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:18621000-18631200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:18621000-18633400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:18621000-18640800	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:18621000-18641200	Weak transcription	Right Ventricle	heart
30	chr7:18621200-18638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:18621200-18640200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr7:18621200-18646800	Weak transcription	HSMM	muscle
33	chr7:18621400-18639000	Weak transcription	Fetal Brain Female	brain
34	chr7:18621400-18641000	Weak transcription	Brain Anterior Caudate	brain
35	chr7:18621600-18633200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:18621800-18623400	Weak transcription	Primary B cells from cord blood	blood
37	chr7:18621800-18624800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:18621800-18633000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:18621800-18643600	Weak transcription	Brain Germinal Matrix	brain
40	chr7:18622000-18641000	Weak transcription	Brain Substantia Nigra	brain
41	chr7:18622200-18623800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr7:18622600-18638400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:18622800-18623200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:18622800-18623800	Enhancers	HSMMtube	muscle
45	chr7:18623000-18623400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:18623000-18623400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr7:18623000-18623600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:18623000-18623600	Enhancers	Aorta	Aorta
49	chr7:18623000-18631200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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