Variant report

Variant	rs10225505
Chromosome Location	chr7:18464042-18464043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10215410	1.00[AMR][1000 genomes]
rs10216127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10223900	1.00[AMR][1000 genomes]
rs10227283	1.00[EUR][1000 genomes]
rs10231336	1.00[AMR][1000 genomes]
rs10232459	1.00[EUR][1000 genomes]
rs10235499	1.00[AMR][1000 genomes]
rs10240266	1.00[AMR][1000 genomes]
rs10242336	1.00[AMR][1000 genomes]
rs10259542	1.00[AMR][1000 genomes]
rs10267142	1.00[AMR][1000 genomes]
rs10267406	1.00[AMR][1000 genomes]
rs10269126	1.00[AMR][1000 genomes]
rs10273908	1.00[AMR][1000 genomes]
rs10282189	1.00[AMR][1000 genomes]
rs12171607	1.00[AMR][1000 genomes]
rs1726604	1.00[AMR][1000 genomes]
rs1918282	1.00[AMR][1000 genomes]
rs28419057	1.00[AMR][1000 genomes]
rs28562712	1.00[AMR][1000 genomes]
rs28593745	1.00[EUR][1000 genomes]
rs28630018	1.00[AMR][1000 genomes]
rs28652749	1.00[AMR][1000 genomes]
rs28759229	1.00[AMR][1000 genomes]
rs28767930	1.00[AMR][1000 genomes]
rs59508709	1.00[EUR][1000 genomes]
rs61710852	1.00[EUR][1000 genomes]
rs73309431	1.00[EUR][1000 genomes]
rs73309436	1.00[EUR][1000 genomes]
rs73309439	1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	1.00[EUR][1000 genomes]
rs73309462	1.00[EUR][1000 genomes]
rs73309467	1.00[EUR][1000 genomes]
rs73309471	1.00[EUR][1000 genomes]
rs73309546	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	1.00[EUR][1000 genomes]
rs73309579	1.00[EUR][1000 genomes]
rs73309582	1.00[EUR][1000 genomes]
rs73309583	1.00[EUR][1000 genomes]
rs73309585	1.00[EUR][1000 genomes]
rs73313258	1.00[EUR][1000 genomes]
rs73313265	1.00[EUR][1000 genomes]
rs73313268	1.00[EUR][1000 genomes]
rs73313274	1.00[EUR][1000 genomes]
rs73313277	1.00[EUR][1000 genomes]
rs73313283	1.00[EUR][1000 genomes]
rs73313295	1.00[EUR][1000 genomes]
rs73313298	1.00[EUR][1000 genomes]
rs73313299	1.00[EUR][1000 genomes]
rs73315005	1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[EUR][1000 genomes]
rs73315010	1.00[EUR][1000 genomes]
rs801530	1.00[AMR][1000 genomes]
rs9655154	1.00[EUR][1000 genomes]
rs9655159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18445600-18482000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:18445800-18467000	Weak transcription	Primary B cells from cord blood	blood
3	chr7:18447200-18468200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:18447400-18466400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:18448200-18467800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:18459800-18465200	Weak transcription	Fetal Stomach	stomach
7	chr7:18460600-18465000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:18460800-18465800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:18460800-18466400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:18460800-18468400	Weak transcription	Pancreas	Pancrea
11	chr7:18461000-18465200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:18461400-18465200	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:18461400-18465400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:18461400-18465800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:18461400-18466200	Weak transcription	NHEK	skin
16	chr7:18461400-18466400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:18461600-18465000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:18461600-18465400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:18461600-18465400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:18461600-18465400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:18461600-18465600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:18461600-18465600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:18461600-18465600	Weak transcription	Osteobl	bone
24	chr7:18461600-18465800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:18461600-18466200	Weak transcription	HMEC	breast
26	chr7:18461600-18466200	Weak transcription	NH-A	brain
27	chr7:18461600-18466600	Weak transcription	NHLF	lung
28	chr7:18461800-18465400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr7:18461800-18465600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:18461800-18465800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:18461800-18466200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:18461800-18466200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:18462000-18465600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:18462000-18465600	Weak transcription	NHDF-Ad	bronchial
35	chr7:18462000-18465800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:18462000-18465800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:18462000-18466600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr7:18462000-18468400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr7:18462200-18465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:18462200-18466400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:18462400-18464200	Weak transcription	Psoas Muscle	Psoas
42	chr7:18462400-18465400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr7:18462400-18468600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:18462400-18469000	Weak transcription	Aorta	Aorta
45	chr7:18462600-18464800	Weak transcription	Fetal Kidney	kidney
46	chr7:18462600-18465600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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