Variant report

Variant	rs10259542
Chromosome Location	chr7:18497271-18497272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10215410	1.00[AMR][1000 genomes]
rs10216127	1.00[AMR][1000 genomes]
rs10223900	1.00[AMR][1000 genomes]
rs10225505	1.00[AMR][1000 genomes]
rs10231336	1.00[AMR][1000 genomes]
rs10235499	1.00[AMR][1000 genomes]
rs10240266	1.00[AMR][1000 genomes]
rs10242336	1.00[AMR][1000 genomes]
rs10267142	1.00[AMR][1000 genomes]
rs10267406	1.00[AMR][1000 genomes]
rs10269126	1.00[AMR][1000 genomes]
rs10273908	1.00[AMR][1000 genomes]
rs10282189	1.00[AMR][1000 genomes]
rs12171607	1.00[AMR][1000 genomes]
rs1726604	1.00[AMR][1000 genomes]
rs1918282	1.00[AMR][1000 genomes]
rs28419057	1.00[AMR][1000 genomes]
rs28562712	1.00[AMR][1000 genomes]
rs28630018	1.00[AMR][1000 genomes]
rs28652749	1.00[AMR][1000 genomes]
rs28759229	1.00[AMR][1000 genomes]
rs28767930	1.00[AMR][1000 genomes]
rs801530	1.00[AMR][1000 genomes]
rs9655159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18482800-18498400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr7:18490200-18497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:18492200-18497600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:18492200-18498400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:18492400-18498400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:18492600-18497400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:18493600-18497600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:18495600-18510800	Weak transcription	Brain Substantia Nigra	brain
9	chr7:18496600-18499000	Enhancers	Fetal Heart	heart
10	chr7:18496800-18500600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:18497200-18497400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links