Variant report

Variant	rs1918282
Chromosome Location	chr7:18569411-18569412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10215410	1.00[AMR][1000 genomes]
rs10216127	1.00[AMR][1000 genomes]
rs10223900	1.00[AMR][1000 genomes]
rs10225505	1.00[AMR][1000 genomes]
rs10231336	1.00[AMR][1000 genomes]
rs10235499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10240266	1.00[AMR][1000 genomes]
rs10242336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259542	1.00[AMR][1000 genomes]
rs10267142	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10267406	1.00[AMR][1000 genomes]
rs10269126	1.00[AMR][1000 genomes]
rs10273908	1.00[AMR][1000 genomes]
rs10282189	1.00[AMR][1000 genomes]
rs12171607	1.00[AMR][1000 genomes]
rs1726604	1.00[AMR][1000 genomes]
rs28419057	1.00[AMR][1000 genomes]
rs28562712	1.00[AMR][1000 genomes]
rs28630018	1.00[AMR][1000 genomes]
rs28652749	1.00[AMR][1000 genomes]
rs28759229	1.00[AMR][1000 genomes]
rs28767930	1.00[AMR][1000 genomes]
rs801530	1.00[AMR][1000 genomes]
rs9655159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv971523	chr7:18566197-18569942	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18553400-18569600	Weak transcription	Left Ventricle	heart
2	chr7:18555200-18580800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:18556200-18575600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:18560400-18574000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:18560600-18584200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:18561000-18592600	Weak transcription	NHEK	skin
7	chr7:18561000-18598000	Weak transcription	HMEC	breast
8	chr7:18561400-18575600	Weak transcription	NHDF-Ad	bronchial
9	chr7:18562000-18575600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:18562400-18569800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:18563400-18574400	Weak transcription	Brain Substantia Nigra	brain
12	chr7:18565200-18570600	Enhancers	Primary B cells from cord blood	blood
13	chr7:18565800-18569800	Weak transcription	Psoas Muscle	Psoas
14	chr7:18566400-18574000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:18566600-18580200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:18567000-18569800	Weak transcription	GM12878-XiMat	blood
17	chr7:18568400-18570200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:18568600-18573600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:18568800-18570600	Enhancers	Primary B cells from peripheral blood	blood
20	chr7:18569000-18569800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:18569000-18569800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr7:18569000-18575600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:18569000-18577400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links