Variant report

Variant	rs10227283
Chromosome Location	chr7:18444954-18444955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18438135..18439820-chr7:18444082..18447055,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10216127	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10225505	1.00[EUR][1000 genomes]
rs10229621	1.00[EUR][1000 genomes]
rs10232459	1.00[EUR][1000 genomes]
rs28593745	1.00[EUR][1000 genomes]
rs59508709	1.00[EUR][1000 genomes]
rs61710852	1.00[EUR][1000 genomes]
rs73309431	1.00[EUR][1000 genomes]
rs73309436	1.00[EUR][1000 genomes]
rs73309439	1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	1.00[EUR][1000 genomes]
rs73309462	1.00[EUR][1000 genomes]
rs73309467	1.00[EUR][1000 genomes]
rs73309546	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	1.00[EUR][1000 genomes]
rs73309579	1.00[EUR][1000 genomes]
rs73309582	1.00[EUR][1000 genomes]
rs73309583	1.00[EUR][1000 genomes]
rs73309585	1.00[EUR][1000 genomes]
rs73313258	1.00[EUR][1000 genomes]
rs73313265	1.00[EUR][1000 genomes]
rs73313268	1.00[EUR][1000 genomes]
rs73313274	1.00[EUR][1000 genomes]
rs73313277	1.00[EUR][1000 genomes]
rs73313283	1.00[EUR][1000 genomes]
rs73313295	1.00[EUR][1000 genomes]
rs73313298	1.00[EUR][1000 genomes]
rs73313299	1.00[EUR][1000 genomes]
rs73315005	1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[EUR][1000 genomes]
rs73315010	1.00[EUR][1000 genomes]
rs9655154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18429200-18461200	Weak transcription	Aorta	Aorta
2	chr7:18440000-18446800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:18440200-18445000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:18440200-18445000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:18440200-18446600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:18440200-18446800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:18440400-18448400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:18440600-18447000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:18441000-18448000	Weak transcription	NHLF	lung
10	chr7:18441200-18446800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:18441200-18450800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:18441400-18446800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:18442200-18445000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:18442400-18449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:18443000-18445400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:18443000-18447600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:18443000-18447800	Weak transcription	NH-A	brain
18	chr7:18443000-18447800	Weak transcription	Osteobl	bone
19	chr7:18443200-18445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:18443600-18446200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr7:18444400-18445000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:18444400-18445800	Enhancers	Primary hematopoietic stem cells	blood
23	chr7:18444400-18446000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:18444600-18445200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:18444600-18445600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr7:18444600-18445600	Enhancers	Primary B cells from peripheral blood	blood
27	chr7:18444600-18445800	Enhancers	Primary B cells from cord blood	blood
28	chr7:18444800-18445200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:18444800-18445400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr7:18444800-18445400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links