Variant report

Variant	rs73313258
Chromosome Location	chr7:18618964-18618965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18614577..18617319-chr7:18617831..18619688,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10216127	1.00[EUR][1000 genomes]
rs10225505	1.00[EUR][1000 genomes]
rs10227283	1.00[EUR][1000 genomes]
rs10240305	1.00[EUR][1000 genomes]
rs10241413	1.00[EUR][1000 genomes]
rs10243449	1.00[EUR][1000 genomes]
rs10247766	1.00[EUR][1000 genomes]
rs11982882	1.00[EUR][1000 genomes]
rs28412143	1.00[EUR][1000 genomes]
rs3852248	1.00[EUR][1000 genomes]
rs4605958	1.00[EUR][1000 genomes]
rs58820211	1.00[EUR][1000 genomes]
rs59508709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61710852	1.00[EUR][1000 genomes]
rs73309431	1.00[EUR][1000 genomes]
rs73309436	1.00[EUR][1000 genomes]
rs73309439	1.00[EUR][1000 genomes]
rs73309445	1.00[EUR][1000 genomes]
rs73309460	1.00[EUR][1000 genomes]
rs73309462	1.00[EUR][1000 genomes]
rs73309467	1.00[EUR][1000 genomes]
rs73309471	1.00[EUR][1000 genomes]
rs73309546	1.00[EUR][1000 genomes]
rs73309559	1.00[EUR][1000 genomes]
rs73309576	1.00[EUR][1000 genomes]
rs73309579	1.00[EUR][1000 genomes]
rs73309582	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73309585	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73311460	1.00[EUR][1000 genomes]
rs73311471	1.00[EUR][1000 genomes]
rs73311474	1.00[EUR][1000 genomes]
rs73311499	1.00[EUR][1000 genomes]
rs73313265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313268	1.00[EUR][1000 genomes]
rs73313274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313295	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73313299	1.00[EUR][1000 genomes]
rs73313328	1.00[EUR][1000 genomes]
rs73313352	1.00[EUR][1000 genomes]
rs73313388	1.00[EUR][1000 genomes]
rs73313400	1.00[EUR][1000 genomes]
rs73313402	1.00[EUR][1000 genomes]
rs73315005	1.00[EUR][1000 genomes]
rs73315007	1.00[EUR][1000 genomes]
rs73315009	1.00[EUR][1000 genomes]
rs73315010	1.00[EUR][1000 genomes]
rs73315435	1.00[EUR][1000 genomes]
rs7812153	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18581600-18620200	Weak transcription	HSMMtube	muscle
2	chr7:18605400-18620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:18606800-18620600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:18606800-18631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:18607000-18630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:18610600-18620400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:18610600-18629800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:18610800-18629600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:18611000-18620200	Weak transcription	Brain Substantia Nigra	brain
10	chr7:18611200-18620400	Weak transcription	Brain Germinal Matrix	brain
11	chr7:18611600-18633000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:18613000-18620400	Weak transcription	Brain Anterior Caudate	brain
13	chr7:18613200-18633200	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:18613400-18619400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:18613400-18620000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:18613600-18624800	Weak transcription	Left Ventricle	heart
17	chr7:18613600-18633200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:18614200-18619200	Weak transcription	Fetal Brain Female	brain
19	chr7:18614200-18633200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:18614400-18620200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:18614400-18620600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:18614400-18624800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:18614400-18630000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:18614600-18620600	Weak transcription	Right Ventricle	heart
25	chr7:18614600-18620600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:18614600-18631200	Weak transcription	Fetal Stomach	stomach
27	chr7:18614600-18633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:18614600-18640400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:18614600-18640400	Weak transcription	Spleen	Spleen
30	chr7:18614600-18644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:18614800-18620600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:18615600-18619200	Weak transcription	Fetal Brain Male	brain
33	chr7:18616000-18621000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:18616200-18630000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr7:18616800-18620600	Weak transcription	Fetal Heart	heart
36	chr7:18617000-18620200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:18617000-18620400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:18617000-18640400	Weak transcription	Brain Angular Gyrus	brain
39	chr7:18617200-18629800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:18617400-18621400	Weak transcription	Primary B cells from cord blood	blood
41	chr7:18617400-18624200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr7:18618000-18623000	Weak transcription	Aorta	Aorta
43	chr7:18618400-18641000	Weak transcription	Psoas Muscle	Psoas
44	chr7:18618800-18624800	Weak transcription	Monocytes-CD14+_RO01746	blood

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