Variant report

Variant	rs11505303
Chromosome Location	chr7:18713610-18713611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10224035	1.00[CEU][hapmap]
rs10224196	1.00[CEU][hapmap]
rs10234134	1.00[CEU][hapmap]
rs10234485	1.00[CEU][hapmap]
rs10237404	1.00[CEU][hapmap]
rs10237427	1.00[CEU][hapmap]
rs10240305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10241000	1.00[CEU][hapmap]
rs10241099	1.00[CEU][hapmap]
rs10241929	1.00[CEU][hapmap]
rs10242505	1.00[CEU][hapmap]
rs10243888	1.00[CEU][hapmap]
rs10249580	1.00[CEU][hapmap]
rs10249862	1.00[CEU][hapmap]
rs10253041	1.00[CEU][hapmap]
rs10254059	1.00[CEU][hapmap]
rs10259213	1.00[CEU][hapmap]
rs10261429	1.00[CEU][hapmap]
rs10261637	1.00[CEU][hapmap]
rs10270954	1.00[CEU][hapmap]
rs10278707	1.00[CEU][hapmap]
rs11982882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17139504	1.00[CEU][hapmap]
rs17139510	1.00[CEU][hapmap]
rs17139544	1.00[CEU][hapmap]
rs17139554	1.00[JPT][hapmap]
rs17139619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17139704	1.00[CEU][hapmap]
rs17139758	1.00[CEU][hapmap]
rs17139854	1.00[CEU][hapmap]
rs17139857	1.00[CEU][hapmap]
rs17139861	1.00[CEU][hapmap]
rs17139867	1.00[CEU][hapmap]
rs17139913	1.00[CEU][hapmap]
rs17139947	1.00[CEU][hapmap]
rs17139975	1.00[CEU][hapmap]
rs17150249	1.00[JPT][hapmap]
rs17150253	1.00[CEU][hapmap]
rs212662	1.00[CEU][hapmap]
rs212663	1.00[CEU][hapmap]
rs212667	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2520336	1.00[CEU][hapmap]
rs2520352	1.00[CEU][hapmap]
rs2520363	1.00[CEU][hapmap]
rs2588613	1.00[CEU][hapmap]
rs3852248	1.00[CHB][hapmap]
rs4605958	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6946945	1.00[CEU][hapmap]
rs6950235	1.00[CEU][hapmap]
rs6956490	1.00[CEU][hapmap]
rs6960766	1.00[CEU][hapmap]
rs7455862	1.00[CEU][hapmap]
rs751185	1.00[ASN][1000 genomes]
rs7777856	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7803715	1.00[CEU][hapmap]
rs7809331	1.00[CEU][hapmap]
rs7812153	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs812395	1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs9918521	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18645400-18721000	Weak transcription	Psoas Muscle	Psoas
2	chr7:18678400-18721200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:18688400-18715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:18696200-18715000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
7	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
8	chr7:18703600-18713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:18709800-18715800	Strong transcription	Primary B cells from cord blood	blood
10	chr7:18711400-18716000	Weak transcription	NHEK	skin
11	chr7:18711600-18714800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:18713400-18713800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:18713400-18715400	Strong transcription	Primary B cells from peripheral blood	blood

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