Variant report

Variant	rs17139544
Chromosome Location	chr7:18705487-18705488
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:18630127..18630658-chr7:18705450..18706373,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10224035	1.00[CEU][hapmap]
rs10224196	1.00[CEU][hapmap]
rs10228036	0.80[LWK][hapmap];0.82[YRI][hapmap]
rs10234134	1.00[CEU][hapmap]
rs10234485	1.00[CEU][hapmap]
rs10237404	1.00[CEU][hapmap]
rs10237427	1.00[CEU][hapmap]
rs10241000	1.00[CEU][hapmap]
rs10241099	1.00[CEU][hapmap]
rs10241929	1.00[CEU][hapmap]
rs10242505	1.00[CEU][hapmap]
rs10243888	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10249580	1.00[CEU][hapmap]
rs10249862	1.00[CEU][hapmap]
rs10253041	1.00[CEU][hapmap]
rs10254059	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10259213	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10261429	1.00[CEU][hapmap]
rs10261637	1.00[CEU][hapmap]
rs10270954	1.00[CEU][hapmap]
rs10278707	1.00[CEU][hapmap]
rs11505303	1.00[CEU][hapmap]
rs17139504	1.00[CEU][hapmap]
rs17139510	1.00[CEU][hapmap]
rs17139704	1.00[CEU][hapmap]
rs17139758	1.00[CEU][hapmap]
rs17139854	1.00[CEU][hapmap]
rs17139857	1.00[CEU][hapmap]
rs17139861	1.00[CEU][hapmap]
rs17139867	1.00[CEU][hapmap]
rs17139913	1.00[CEU][hapmap]
rs17139947	1.00[CEU][hapmap]
rs17139975	1.00[CEU][hapmap]
rs17150253	1.00[CEU][hapmap]
rs212662	1.00[CEU][hapmap]
rs212663	1.00[CEU][hapmap]
rs2520336	1.00[CEU][hapmap]
rs2520352	1.00[CEU][hapmap]
rs2520363	1.00[CEU][hapmap]
rs2588613	1.00[CEU][hapmap]
rs3901982	1.00[CEU][hapmap]
rs6946945	1.00[CEU][hapmap]
rs6950235	1.00[CEU][hapmap]
rs6956490	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6960766	1.00[CEU][hapmap]
rs7455862	1.00[CEU][hapmap]
rs7803715	1.00[CEU][hapmap]
rs7809331	1.00[CEU][hapmap]
rs9918521	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18645200-18708000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr7:18645400-18721000	Weak transcription	Psoas Muscle	Psoas
3	chr7:18645800-18706000	Weak transcription	HMEC	breast
4	chr7:18656000-18706000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:18671400-18705600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:18673200-18707000	Weak transcription	Fetal Kidney	kidney
7	chr7:18678400-18721200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:18682400-18706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:18688400-18706000	Weak transcription	NHEK	skin
10	chr7:18688400-18715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:18688600-18706000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:18688800-18705800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:18688800-18706600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:18689000-18707400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:18689400-18705800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:18689400-18708200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr7:18689400-18713200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:18689600-18705800	Weak transcription	Left Ventricle	heart
20	chr7:18689600-18706800	Weak transcription	NH-A	brain
21	chr7:18690000-18708200	Weak transcription	Fetal Heart	heart
22	chr7:18694600-18705800	Weak transcription	Esophagus	oesophagus
23	chr7:18695800-18706400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:18696200-18715000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:18696800-18710800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
27	chr7:18699400-18707600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:18699600-18706200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:18699600-18706800	Weak transcription	NHDF-Ad	bronchial
30	chr7:18699600-18708400	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
32	chr7:18702600-18705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:18703200-18706400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr7:18703200-18709800	Weak transcription	Primary B cells from cord blood	blood
35	chr7:18703400-18705600	Weak transcription	HUVEC	blood vessel
36	chr7:18703400-18706000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:18703600-18705800	Weak transcription	Spleen	Spleen
38	chr7:18703600-18706600	Weak transcription	Adipose Nuclei	Adipose
39	chr7:18703600-18708200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:18703600-18713800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:18704200-18705800	Weak transcription	Primary B cells from peripheral blood	blood

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