Variant report

Variant	rs6956490
Chromosome Location	chr7:18729869-18729870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224035	1.00[CEU][hapmap]
rs10224196	1.00[CEU][hapmap]
rs10234134	1.00[CEU][hapmap]
rs10234485	1.00[CEU][hapmap]
rs10237404	1.00[CEU][hapmap]
rs10237427	1.00[CEU][hapmap]
rs10241000	1.00[CEU][hapmap]
rs10241099	1.00[CEU][hapmap]
rs10241929	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10242505	1.00[CEU][hapmap]
rs10243888	1.00[CEU][hapmap]
rs10249580	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10249862	1.00[CEU][hapmap]
rs10253041	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10254059	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10259213	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10261429	1.00[CEU][hapmap]
rs10261637	1.00[CEU][hapmap]
rs10270954	1.00[CEU][hapmap]
rs10278707	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11505303	1.00[CEU][hapmap]
rs17139504	1.00[CEU][hapmap]
rs17139510	1.00[CEU][hapmap]
rs17139544	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17139704	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17139758	1.00[CEU][hapmap]
rs17139854	1.00[CEU][hapmap]
rs17139857	1.00[CEU][hapmap]
rs17139861	1.00[CEU][hapmap]
rs17139867	1.00[CEU][hapmap]
rs17139913	1.00[CEU][hapmap]
rs17139947	1.00[CEU][hapmap]
rs17139975	1.00[CEU][hapmap]
rs17150253	1.00[CEU][hapmap]
rs212662	1.00[CEU][hapmap]
rs212663	1.00[CEU][hapmap]
rs2520336	1.00[CEU][hapmap]
rs2520352	1.00[CEU][hapmap]
rs2520363	1.00[CEU][hapmap]
rs2588613	1.00[CEU][hapmap]
rs28444384	1.00[AMR][1000 genomes]
rs28726229	1.00[AMR][1000 genomes]
rs58703332	1.00[AMR][1000 genomes]
rs6946945	1.00[CEU][hapmap]
rs6950235	1.00[CEU][hapmap]
rs6960766	1.00[CEU][hapmap]
rs7455862	1.00[CEU][hapmap]
rs7803715	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs7809331	1.00[CEU][hapmap]
rs9918521	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18688800-18746400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:18698000-18743400	Weak transcription	HSMMtube	muscle
3	chr7:18699600-18776000	Weak transcription	Aorta	Aorta
4	chr7:18715400-18732800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:18716200-18733600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:18723200-18732800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:18723400-18732600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:18726000-18736400	Weak transcription	NH-A	brain
9	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
10	chr7:18728800-18730000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:18729000-18731400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:18729800-18732800	Weak transcription	NHDF-Ad	bronchial
13	chr7:18729800-18733000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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