Variant report

Variant	rs2588613
Chromosome Location	chr7:18836310-18836311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1018870	1.00[EUR][1000 genomes]
rs10224035	1.00[CEU][hapmap]
rs10224196	1.00[CEU][hapmap]
rs10234134	1.00[CEU][hapmap]
rs10234485	1.00[CEU][hapmap]
rs10237404	1.00[CEU][hapmap]
rs10237427	1.00[CEU][hapmap]
rs10241000	1.00[CEU][hapmap]
rs10241099	1.00[CEU][hapmap]
rs10241929	1.00[CEU][hapmap]
rs10242505	1.00[CEU][hapmap]
rs10243888	1.00[CEU][hapmap]
rs10249580	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10249862	1.00[CEU][hapmap]
rs10253041	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10254059	1.00[CEU][hapmap]
rs10259213	1.00[CEU][hapmap]
rs10261429	1.00[CEU][hapmap]
rs10261637	1.00[CEU][hapmap]
rs10270954	1.00[CEU][hapmap]
rs10278707	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11505303	1.00[CEU][hapmap]
rs17139504	1.00[CEU][hapmap]
rs17139510	1.00[CEU][hapmap]
rs17139544	1.00[CEU][hapmap]
rs17139704	1.00[CEU][hapmap]
rs17139758	1.00[CEU][hapmap]
rs17139854	1.00[CEU][hapmap]
rs17139857	1.00[CEU][hapmap]
rs17139861	1.00[CEU][hapmap]
rs17139867	1.00[CEU][hapmap]
rs17139913	1.00[CEU][hapmap]
rs17139947	1.00[CEU][hapmap]
rs17139975	1.00[CEU][hapmap]
rs17150253	1.00[CEU][hapmap]
rs212662	1.00[CEU][hapmap]
rs212663	1.00[CEU][hapmap]
rs2520336	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs2520352	1.00[CEU][hapmap]
rs2520363	1.00[CEU][hapmap]
rs2588624	1.00[EUR][1000 genomes]
rs28444384	1.00[EUR][1000 genomes]
rs28726229	1.00[EUR][1000 genomes]
rs6946945	1.00[CEU][hapmap]
rs6950235	1.00[CEU][hapmap]
rs6956490	1.00[CEU][hapmap]
rs6960766	1.00[CEU][hapmap]
rs7455862	1.00[CEU][hapmap]
rs7803715	1.00[CEU][hapmap]
rs7809331	1.00[CEU][hapmap]
rs9918521	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18833000-18837200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:18833000-18837800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:18833200-18837800	Weak transcription	NH-A	brain
4	chr7:18833200-18838000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:18833400-18837400	Weak transcription	Osteobl	bone
6	chr7:18833400-18838000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:18833400-18838000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:18833400-18838000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:18834000-18838000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:18834200-18845200	Weak transcription	Aorta	Aorta
11	chr7:18835400-18836800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:18835800-18836400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr7:18835800-18836800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:18835800-18838400	Weak transcription	Psoas Muscle	Psoas
15	chr7:18836000-18836800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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