Variant report

Variant	rs10242505
Chromosome Location	chr7:18788885-18788886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10224035	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs10224196	1.00[CEU][hapmap]
rs10234134	1.00[CEU][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10234485	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10237404	1.00[CEU][hapmap]
rs10237427	1.00[CEU][hapmap]
rs10241000	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs10241099	1.00[CEU][hapmap]
rs10241929	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10243888	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10245010	1.00[EUR][1000 genomes]
rs10245337	1.00[EUR][1000 genomes]
rs10249414	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs10249580	1.00[CEU][hapmap]
rs10249862	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10253041	1.00[CEU][hapmap]
rs10254059	1.00[CEU][hapmap]
rs10259213	1.00[CEU][hapmap]
rs10261429	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10261637	1.00[CEU][hapmap]
rs10264800	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10270954	1.00[CEU][hapmap]
rs10277165	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10278707	1.00[CEU][hapmap]
rs11505303	1.00[CEU][hapmap]
rs17139504	1.00[CEU][hapmap]
rs17139510	1.00[CEU][hapmap]
rs17139544	1.00[CEU][hapmap]
rs17139704	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17139758	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17139854	1.00[CEU][hapmap]
rs17139857	1.00[CEU][hapmap]
rs17139861	1.00[CEU][hapmap]
rs17139867	1.00[CEU][hapmap]
rs17139913	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17139947	1.00[CEU][hapmap]
rs17139975	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17140010	1.00[EUR][1000 genomes]
rs17150253	1.00[CEU][hapmap]
rs1962774	1.00[EUR][1000 genomes]
rs212662	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs212663	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2520336	1.00[CEU][hapmap]
rs2520352	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2520363	1.00[CEU][hapmap]
rs2588609	1.00[EUR][1000 genomes]
rs2588613	1.00[CEU][hapmap]
rs28436911	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28447433	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28463874	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28489181	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28615740	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28651961	0.80[AFR][1000 genomes]
rs28700157	1.00[EUR][1000 genomes]
rs28824774	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58703332	1.00[EUR][1000 genomes]
rs6946945	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6950235	1.00[CEU][hapmap]
rs6955566	1.00[EUR][1000 genomes]
rs6956490	1.00[CEU][hapmap]
rs6960766	1.00[CEU][hapmap]
rs73312654	1.00[EUR][1000 genomes]
rs73683145	1.00[EUR][1000 genomes]
rs7455862	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7784004	1.00[EUR][1000 genomes]
rs7803715	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7809331	1.00[CEU][hapmap]
rs9632592	1.00[EUR][1000 genomes]
rs9918521	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757218	chr7:18767714-18801340	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759516	chr7:18767714-18801340	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18726200-18790200	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18765200-18810600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:18787400-18801800	Weak transcription	Psoas Muscle	Psoas
4	chr7:18787800-18792400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:18787800-18810800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:18788200-18790800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:18788600-18789000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:18788600-18789000	ZNF genes & repeats	Aorta	Aorta
9	chr7:18788600-18789000	ZNF genes & repeats	Left Ventricle	heart
10	chr7:18788600-18789000	ZNF genes & repeats	HSMM	muscle
11	chr7:18788800-18801800	Weak transcription	Primary monocytes fromperipheralblood	blood

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