Variant report

Variant	rs17140010
Chromosome Location	chr7:18844071-18844072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10234134	1.00[EUR][1000 genomes]
rs10234485	1.00[EUR][1000 genomes]
rs10241000	1.00[EUR][1000 genomes]
rs10241929	1.00[EUR][1000 genomes]
rs10242505	1.00[EUR][1000 genomes]
rs10243888	1.00[EUR][1000 genomes]
rs10245010	1.00[EUR][1000 genomes]
rs10245337	1.00[EUR][1000 genomes]
rs10249414	1.00[EUR][1000 genomes]
rs10249862	1.00[EUR][1000 genomes]
rs10261429	1.00[EUR][1000 genomes]
rs10264800	1.00[EUR][1000 genomes]
rs10277165	1.00[EUR][1000 genomes]
rs17139704	1.00[EUR][1000 genomes]
rs17139758	1.00[EUR][1000 genomes]
rs17139913	1.00[EUR][1000 genomes]
rs17139975	1.00[EUR][1000 genomes]
rs1962774	1.00[EUR][1000 genomes]
rs212662	1.00[EUR][1000 genomes]
rs212663	1.00[EUR][1000 genomes]
rs2520352	1.00[EUR][1000 genomes]
rs2588609	1.00[EUR][1000 genomes]
rs28436911	1.00[EUR][1000 genomes]
rs28447433	1.00[EUR][1000 genomes]
rs28463874	1.00[EUR][1000 genomes]
rs28489181	1.00[EUR][1000 genomes]
rs28615740	1.00[EUR][1000 genomes]
rs28700157	1.00[EUR][1000 genomes]
rs28824774	1.00[EUR][1000 genomes]
rs58703332	1.00[EUR][1000 genomes]
rs6946945	1.00[EUR][1000 genomes]
rs6955566	1.00[EUR][1000 genomes]
rs73312654	1.00[EUR][1000 genomes]
rs73683145	1.00[EUR][1000 genomes]
rs7455862	1.00[EUR][1000 genomes]
rs7784004	1.00[EUR][1000 genomes]
rs7803715	1.00[EUR][1000 genomes]
rs9632592	1.00[EUR][1000 genomes]
rs9918521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18834200-18845200	Weak transcription	Aorta	Aorta
2	chr7:18838600-18845600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:18843400-18844200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:18843600-18844400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:18843600-18845200	Enhancers	Fetal Heart	heart
6	chr7:18843800-18844200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:18844000-18845200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:18844000-18847200	Weak transcription	HMEC	breast
9	chr7:18844000-18858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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