Variant report

Variant	rs28447433
Chromosome Location	chr7:18790353-18790354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10224035	0.91[AFR][1000 genomes]
rs10234134	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10234485	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10241000	1.00[EUR][1000 genomes]
rs10241929	1.00[EUR][1000 genomes]
rs10242505	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10243888	1.00[EUR][1000 genomes]
rs10245010	1.00[EUR][1000 genomes]
rs10245337	1.00[EUR][1000 genomes]
rs10249414	1.00[EUR][1000 genomes]
rs10249862	1.00[EUR][1000 genomes]
rs10261429	1.00[EUR][1000 genomes]
rs10264800	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10277165	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17139704	1.00[EUR][1000 genomes]
rs17139758	1.00[EUR][1000 genomes]
rs17139913	1.00[EUR][1000 genomes]
rs17139975	1.00[EUR][1000 genomes]
rs17140010	1.00[EUR][1000 genomes]
rs1962774	1.00[EUR][1000 genomes]
rs212662	1.00[EUR][1000 genomes]
rs212663	1.00[EUR][1000 genomes]
rs2520352	1.00[EUR][1000 genomes]
rs2588609	1.00[EUR][1000 genomes]
rs28436911	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28463874	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28489181	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28615740	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28651961	0.83[AFR][1000 genomes]
rs28700157	1.00[EUR][1000 genomes]
rs28824774	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58703332	1.00[EUR][1000 genomes]
rs6946945	1.00[EUR][1000 genomes]
rs6955566	1.00[EUR][1000 genomes]
rs73312654	1.00[EUR][1000 genomes]
rs73683145	1.00[EUR][1000 genomes]
rs7455862	1.00[EUR][1000 genomes]
rs7784004	1.00[EUR][1000 genomes]
rs7803715	1.00[EUR][1000 genomes]
rs9632592	1.00[EUR][1000 genomes]
rs9918521	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757218	chr7:18767714-18801340	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759516	chr7:18767714-18801340	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18765200-18810600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:18787400-18801800	Weak transcription	Psoas Muscle	Psoas
3	chr7:18787800-18792400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:18787800-18810800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:18788200-18790800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:18788800-18801800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:18789000-18790400	Weak transcription	HSMM	muscle
8	chr7:18789000-18794000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:18789000-18807800	Weak transcription	Aorta	Aorta
10	chr7:18789000-18808600	Weak transcription	Left Ventricle	heart
11	chr7:18789600-18792400	Weak transcription	HSMMtube	muscle
12	chr7:18790200-18790600	Strong transcription	Primary B cells from cord blood	blood

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