Variant report

Variant	rs2520363
Chromosome Location	chr7:18826672-18826673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224035	1.00[CEU][hapmap]
rs10224196	1.00[CEU][hapmap]
rs10234134	1.00[CEU][hapmap]
rs10234485	1.00[CEU][hapmap]
rs10237404	1.00[CEU][hapmap]
rs10237427	1.00[CEU][hapmap]
rs10241000	1.00[CEU][hapmap]
rs10241099	1.00[CEU][hapmap]
rs10241929	1.00[CEU][hapmap]
rs10242505	1.00[CEU][hapmap]
rs10243888	1.00[CEU][hapmap]
rs10249580	1.00[CEU][hapmap]
rs10249862	1.00[CEU][hapmap]
rs10253041	1.00[CEU][hapmap]
rs10254059	1.00[CEU][hapmap]
rs10259213	1.00[CEU][hapmap]
rs10261429	1.00[CEU][hapmap]
rs10261637	1.00[CEU][hapmap]
rs10270954	1.00[CEU][hapmap]
rs10278707	1.00[CEU][hapmap]
rs11505303	1.00[CEU][hapmap]
rs17139504	1.00[CEU][hapmap]
rs17139510	1.00[CEU][hapmap]
rs17139544	1.00[CEU][hapmap]
rs17139704	1.00[CEU][hapmap]
rs17139758	1.00[CEU][hapmap]
rs17139854	1.00[CEU][hapmap]
rs17139857	1.00[CEU][hapmap]
rs17139861	1.00[CEU][hapmap]
rs17139867	1.00[CEU][hapmap]
rs17139913	1.00[CEU][hapmap]
rs17139947	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139975	1.00[CEU][hapmap]
rs17150253	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs212662	1.00[CEU][hapmap]
rs212663	1.00[CEU][hapmap]
rs2520336	1.00[CEU][hapmap]
rs2520352	1.00[CEU][hapmap]
rs2588613	1.00[CEU][hapmap]
rs3901982	1.00[CEU][hapmap]
rs6946945	1.00[CEU][hapmap]
rs6950235	1.00[CEU][hapmap]
rs6956490	1.00[CEU][hapmap]
rs6960766	1.00[CEU][hapmap]
rs73310546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7455344	1.00[ASN][1000 genomes]
rs7455862	1.00[CEU][hapmap]
rs7803715	1.00[CEU][hapmap]
rs7809331	1.00[CEU][hapmap]
rs9918521	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18790600-18835000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18818600-18832200	Weak transcription	Osteobl	bone
3	chr7:18818800-18832400	Weak transcription	HSMMtube	muscle
4	chr7:18822200-18827000	Weak transcription	Adipose Nuclei	Adipose
5	chr7:18826400-18828000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:18826600-18827600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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