Variant report

Variant	rs10259530
Chromosome Location	chr7:38695968-38695969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11984238	0.87[ASN][1000 genomes]
rs12701649	0.84[ASN][1000 genomes]
rs12701650	0.81[AMR][1000 genomes]
rs17171426	0.91[ASN][1000 genomes]
rs17171428	0.87[ASN][1000 genomes]
rs17171430	0.85[ASN][1000 genomes]
rs17171431	0.93[ASN][1000 genomes]
rs17171432	0.85[ASN][1000 genomes]
rs2392594	0.87[ASN][1000 genomes]
rs34667977	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4560708	0.87[ASN][1000 genomes]
rs55642506	0.85[ASN][1000 genomes]
rs57092705	0.85[ASN][1000 genomes]
rs57212617	0.85[ASN][1000 genomes]
rs57278715	0.85[ASN][1000 genomes]
rs57353808	0.83[ASN][1000 genomes]
rs57365048	0.85[ASN][1000 genomes]
rs58337836	0.85[ASN][1000 genomes]
rs59705431	0.85[ASN][1000 genomes]
rs6462857	0.87[ASN][1000 genomes]
rs6944287	0.86[ASN][1000 genomes]
rs6945492	0.82[ASN][1000 genomes]
rs6977993	0.86[ASN][1000 genomes]
rs73695804	0.85[ASN][1000 genomes]
rs73695806	0.85[ASN][1000 genomes]
rs73695807	0.85[ASN][1000 genomes]
rs73695808	0.85[ASN][1000 genomes]
rs73695809	0.85[ASN][1000 genomes]
rs73695810	0.85[ASN][1000 genomes]
rs73695811	0.80[ASN][1000 genomes]
rs73695812	0.85[ASN][1000 genomes]
rs73695813	0.83[ASN][1000 genomes]
rs73695815	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv966781	chr7:38694728-38696473	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38694400-38698200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:38694800-38696400	Enhancers	Fetal Muscle Leg	muscle
3	chr7:38695400-38696000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:38695600-38696400	Enhancers	Fetal Muscle Trunk	muscle
5	chr7:38695600-38696400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr7:38695600-38697000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
7	chr7:38695600-38700000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr7:38695600-38700200	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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