Variant report
| Variant | rs6944287 |
|---|---|
| Chromosome Location | chr7:38703472-38703473 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10259530 | 0.86[ASN][1000 genomes] |
| rs11984238 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12701649 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17171430 | 0.83[ASN][1000 genomes] |
| rs17171431 | 0.90[ASN][1000 genomes] |
| rs17171432 | 0.83[ASN][1000 genomes] |
| rs2392594 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4560708 | 0.81[ASN][1000 genomes] |
| rs55642506 | 0.83[ASN][1000 genomes] |
| rs57092705 | 0.83[ASN][1000 genomes] |
| rs57212617 | 0.83[ASN][1000 genomes] |
| rs57278715 | 0.83[ASN][1000 genomes] |
| rs57353808 | 0.81[ASN][1000 genomes] |
| rs57365048 | 0.83[ASN][1000 genomes] |
| rs58337836 | 0.83[ASN][1000 genomes] |
| rs59705431 | 0.83[ASN][1000 genomes] |
| rs6462857 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6945492 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6977993 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73695804 | 0.83[ASN][1000 genomes] |
| rs73695806 | 0.83[ASN][1000 genomes] |
| rs73695807 | 0.83[ASN][1000 genomes] |
| rs73695808 | 0.83[ASN][1000 genomes] |
| rs73695809 | 0.83[ASN][1000 genomes] |
| rs73695810 | 0.83[ASN][1000 genomes] |
| rs73695812 | 0.83[ASN][1000 genomes] |
| rs73695813 | 0.81[ASN][1000 genomes] |
| rs73695815 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932229 | chr7:38248340-38727527 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:38696000-38726000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
