Variant report

Variant	rs6462857
Chromosome Location	chr7:38716509-38716510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10244270	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10259530	0.87[ASN][1000 genomes]
rs10951569	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11981077	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11984238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12701649	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171430	0.82[ASN][1000 genomes]
rs17171431	0.89[ASN][1000 genomes]
rs17171432	0.82[ASN][1000 genomes]
rs2116666	0.82[EUR][1000 genomes]
rs2392593	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2392594	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560708	0.82[ASN][1000 genomes]
rs55642506	0.82[ASN][1000 genomes]
rs57092705	0.82[ASN][1000 genomes]
rs57212617	0.82[ASN][1000 genomes]
rs57278715	0.82[ASN][1000 genomes]
rs57353808	0.80[ASN][1000 genomes]
rs57365048	0.82[ASN][1000 genomes]
rs58337836	0.82[ASN][1000 genomes]
rs59705431	0.82[ASN][1000 genomes]
rs6944287	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945492	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6945629	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6977813	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6977993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978500	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6978759	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73695804	0.82[ASN][1000 genomes]
rs73695806	0.82[ASN][1000 genomes]
rs73695807	0.82[ASN][1000 genomes]
rs73695808	0.82[ASN][1000 genomes]
rs73695809	0.82[ASN][1000 genomes]
rs73695810	0.82[ASN][1000 genomes]
rs73695812	0.82[ASN][1000 genomes]
rs73695813	0.80[ASN][1000 genomes]
rs73695815	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38696000-38726000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:38714000-38719000	Weak transcription	HUVEC	blood vessel
3	chr7:38714000-38721800	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:38714600-38717200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:38714800-38717400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:38715800-38716800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:38715800-38719000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links