Variant report

Variant	rs10259820
Chromosome Location	chr7:80692057-80692058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80544433..80547832-chr7:80692006..80696371,5	MCF-7	breast:
2	chr7:80690552..80692253-chr7:80697975..80700907,2	K562	blood:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1208098	0.80[ASN][1000 genomes]
rs1208099	0.87[CEU][hapmap]
rs1208100	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1208101	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12707153	0.81[EUR][1000 genomes]
rs1528737	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1636549	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1636551	0.83[ASN][1000 genomes]
rs1636552	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1636553	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1636556	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1636570	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1636574	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1636579	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1636581	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1636594	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1729436	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1729440	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1729441	0.82[EUR][1000 genomes]
rs1729455	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1729456	0.82[EUR][1000 genomes]
rs2527855	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2527858	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2527859	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34391690	0.81[ASN][1000 genomes]
rs35168626	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs728106	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs728107	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7789668	0.94[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs853072	0.80[EUR][1000 genomes]
rs853074	0.94[CEU][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap]
rs853075	0.94[CEU][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.82[TSI][hapmap]
rs853076	0.87[CEU][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap]
rs853078	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs9767867	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9767896	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80691600-80692200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:80691600-80692400	Enhancers	A549	lung
3	chr7:80691600-80694000	Enhancers	Adipose Nuclei	Adipose
4	chr7:80691600-80694000	Enhancers	Fetal Lung	lung
5	chr7:80691600-80695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:80691800-80695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:80692000-80692800	Weak transcription	Rectal Smooth Muscle	rectum

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