Variant report

Variant	rs853076
Chromosome Location	chr7:80664917-80664918
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80547706..80549655-chr7:80663458..80666420,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10259820	0.87[CEU][hapmap];0.88[GIH][hapmap];0.85[TSI][hapmap]
rs1208096	0.81[EUR][1000 genomes]
rs1208097	0.85[EUR][1000 genomes]
rs1208098	0.83[EUR][1000 genomes]
rs1208099	0.87[CEU][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs1208100	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs1208101	0.86[EUR][1000 genomes]
rs1212482	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12707153	0.87[EUR][1000 genomes]
rs1528737	0.82[EUR][1000 genomes]
rs1636549	0.82[EUR][1000 genomes]
rs1636552	0.82[EUR][1000 genomes]
rs1636553	0.82[EUR][1000 genomes]
rs1636556	0.94[CEU][hapmap];0.98[GIH][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs1636562	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1636574	0.80[EUR][1000 genomes]
rs1636579	0.81[EUR][1000 genomes]
rs1636581	0.81[EUR][1000 genomes]
rs1636594	0.82[EUR][1000 genomes]
rs1729436	0.86[EUR][1000 genomes]
rs1729440	0.82[EUR][1000 genomes]
rs1729441	0.84[EUR][1000 genomes]
rs1729445	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1729455	0.82[EUR][1000 genomes]
rs1729456	0.84[EUR][1000 genomes]
rs2527855	0.82[EUR][1000 genomes]
rs2527858	0.81[EUR][1000 genomes]
rs35168626	0.82[EUR][1000 genomes]
rs728106	0.84[EUR][1000 genomes]
rs728107	0.84[EUR][1000 genomes]
rs7789668	0.82[CEU][hapmap]
rs853042	0.81[CEU][hapmap]
rs853066	0.81[CEU][hapmap]
rs853067	0.81[CEU][hapmap]
rs853069	0.81[CEU][hapmap]
rs853070	0.80[CEU][hapmap]
rs853072	0.86[EUR][1000 genomes]
rs853074	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs853075	1.00[ASW][hapmap];0.94[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs853077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853078	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853079	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs853080	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs853081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853082	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs853083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs853084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853088	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853089	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853090	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs853091	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853096	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs853097	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs860464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80659000-80666400	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:80659200-80665600	Weak transcription	HSMM	muscle
3	chr7:80664800-80665600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links