Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:80692851..80695599-chr7:80695778..80697561,2	MCF-7	breast:
2	chr7:80550910..80552640-chr7:80692789..80694831,2	MCF-7	breast:
3	chr7:80544433..80547832-chr7:80692006..80696371,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10259820	0.94[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10265617	0.86[YRI][hapmap]
rs1208099	0.89[CEU][hapmap]
rs1208100	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1528737	0.85[EUR][1000 genomes]
rs1636549	0.85[EUR][1000 genomes]
rs1636552	0.85[EUR][1000 genomes]
rs1636553	0.85[EUR][1000 genomes]
rs1636556	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1636570	0.85[EUR][1000 genomes]
rs1636574	0.87[EUR][1000 genomes]
rs1636579	0.87[EUR][1000 genomes]
rs1636581	0.87[EUR][1000 genomes]
rs1636594	0.85[EUR][1000 genomes]
rs1729436	0.81[EUR][1000 genomes]
rs1729440	0.85[EUR][1000 genomes]
rs1729441	0.84[EUR][1000 genomes]
rs1729455	0.85[EUR][1000 genomes]
rs1729456	0.84[EUR][1000 genomes]
rs2367224	0.86[YRI][hapmap]
rs2527855	0.85[EUR][1000 genomes]
rs2527858	0.84[EUR][1000 genomes]
rs2527859	0.81[EUR][1000 genomes]
rs35168626	0.85[EUR][1000 genomes]
rs728106	0.84[EUR][1000 genomes]
rs728107	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs853074	0.88[CEU][hapmap]
rs853075	0.88[CEU][hapmap]
rs853076	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80691600-80694000	Enhancers	Adipose Nuclei	Adipose
2	chr7:80691600-80694000	Enhancers	Fetal Lung	lung
3	chr7:80691600-80695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:80691800-80695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:80692200-80694200	Enhancers	Colon Smooth Muscle	Colon
6	chr7:80692400-80693800	Weak transcription	A549	lung
7	chr7:80692600-80695200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:80693200-80693400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:80693200-80693800	Weak transcription	Aorta	Aorta
10	chr7:80693200-80694000	Enhancers	Fetal Stomach	stomach
11	chr7:80693200-80694400	Enhancers	HSMM	muscle
12	chr7:80693200-80695000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: