Variant report

Variant	rs10261616
Chromosome Location	chr7:14634600-14634601
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10226842	0.91[YRI][hapmap]
rs10227542	1.00[MKK][hapmap]
rs10230627	0.89[YRI][hapmap]
rs10245139	0.84[YRI][hapmap]
rs10246525	0.92[YRI][hapmap]
rs10247504	0.91[YRI][hapmap]
rs10250024	0.92[YRI][hapmap]
rs10256254	0.87[EUR][1000 genomes]
rs10265317	0.90[YRI][hapmap]
rs10277363	0.92[YRI][hapmap]
rs10278943	0.92[YRI][hapmap]
rs10499461	1.00[MKK][hapmap]
rs1525075	1.00[MKK][hapmap];0.92[YRI][hapmap]
rs1525085	0.90[EUR][1000 genomes]
rs16878257	1.00[MKK][hapmap]
rs16878263	1.00[MKK][hapmap]
rs17168294	0.85[YRI][hapmap]
rs17168300	0.92[YRI][hapmap]
rs17168313	1.00[MKK][hapmap];0.92[YRI][hapmap]
rs17168323	1.00[MKK][hapmap];0.92[YRI][hapmap]
rs17168348	1.00[MKK][hapmap]
rs17168394	0.85[MKK][hapmap]
rs17168423	0.85[MKK][hapmap]
rs62443558	0.90[EUR][1000 genomes]
rs62445564	0.90[EUR][1000 genomes]
rs62445565	0.90[EUR][1000 genomes]
rs62445566	0.90[EUR][1000 genomes]
rs62445593	0.90[EUR][1000 genomes]
rs7800794	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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