Variant report

Variant	rs10227542
Chromosome Location	chr7:14679619-14679620
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:14673431..14676037-chr7:14677776..14679633,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10215386	1.00[AMR][1000 genomes]
rs10227079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230627	0.80[AFR][1000 genomes]
rs10233046	1.00[AMR][1000 genomes]
rs10238594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250024	0.80[AFR][1000 genomes]
rs10251445	0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252560	0.80[AFR][1000 genomes]
rs10261616	1.00[MKK][hapmap]
rs10265238	1.00[AMR][1000 genomes]
rs10267926	0.97[AFR][1000 genomes]
rs10282218	0.80[AFR][1000 genomes]
rs10499461	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs12112997	1.00[AMR][1000 genomes]
rs12334082	1.00[AMR][1000 genomes]
rs12334160	1.00[AMR][1000 genomes]
rs1525075	0.86[ASW][hapmap];1.00[MKK][hapmap]
rs16878257	1.00[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878259	0.86[ASW][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878263	1.00[MKK][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168300	0.80[AFR][1000 genomes]
rs17168313	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs17168323	0.86[ASW][hapmap];1.00[MKK][hapmap];0.80[AFR][1000 genomes]
rs17168342	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168348	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs17168362	1.00[AMR][1000 genomes]
rs17168385	1.00[AMR][1000 genomes]
rs17168392	1.00[AMR][1000 genomes]
rs17168394	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs17168400	1.00[AMR][1000 genomes]
rs17168404	1.00[AMR][1000 genomes]
rs17168412	1.00[AMR][1000 genomes]
rs17168423	0.85[MKK][hapmap]
rs28687851	1.00[AMR][1000 genomes]
rs6948854	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs6969161	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs73682547	1.00[AMR][1000 genomes]
rs7802613	1.00[AMR][1000 genomes]
rs7802922	1.00[AMR][1000 genomes]
rs9691428	1.00[CHD][hapmap]
rs9986816	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14678200-14680400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:14678800-14680000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:14678800-14680400	Enhancers	HMEC	breast
4	chr7:14679000-14679800	Enhancers	NHEK	skin
5	chr7:14679000-14680200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:14679000-14680200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:14679000-14680200	Enhancers	Stomach Mucosa	stomach
8	chr7:14679200-14683200	Weak transcription	Pancreas	Pancrea
9	chr7:14679600-14679800	Enhancers	Duodenum Mucosa	Duodenum

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