Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13319140..13319925-chr7:14729283..14730100,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10215386	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227079	1.00[AMR][1000 genomes]
rs10227542	1.00[AMR][1000 genomes]
rs10230236	1.00[AMR][1000 genomes]
rs10233046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238594	1.00[AMR][1000 genomes]
rs10251445	1.00[AMR][1000 genomes]
rs10265238	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277933	0.93[AFR][1000 genomes]
rs10499461	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112997	1.00[AMR][1000 genomes]
rs12334082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878257	1.00[AMR][1000 genomes]
rs16878259	1.00[AMR][1000 genomes]
rs16878263	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs17168342	1.00[AMR][1000 genomes]
rs17168348	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168362	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168385	1.00[AMR][1000 genomes]
rs17168392	1.00[AMR][1000 genomes]
rs17168394	1.00[AMR][1000 genomes]
rs17168400	1.00[AMR][1000 genomes]
rs17168404	1.00[AMR][1000 genomes]
rs17168412	1.00[AMR][1000 genomes]
rs28687851	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6948854	1.00[AMR][1000 genomes]
rs6969161	1.00[AMR][1000 genomes]
rs73682547	1.00[AMR][1000 genomes]
rs7802613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7802922	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9986816	0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14704200-14736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14712800-14775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14728800-14731400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:14729400-14730400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr7:14729600-14730200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:14729600-14730200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:14729600-14730200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:14729600-14730200	Flanking Active TSS	Liver	Liver
9	chr7:14729600-14730200	Enhancers	Fetal Kidney	kidney
10	chr7:14729800-14730000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr7:14729800-14730000	Enhancers	Fetal Lung	lung

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