Variant report

Variant	rs17168400
Chromosome Location	chr7:14801767-14801768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10215386	1.00[AMR][1000 genomes]
rs10227079	1.00[AMR][1000 genomes]
rs10227542	1.00[AMR][1000 genomes]
rs10230236	1.00[AMR][1000 genomes]
rs10230627	1.00[EUR][1000 genomes]
rs10233046	1.00[AMR][1000 genomes]
rs10238594	1.00[AMR][1000 genomes]
rs10250024	1.00[EUR][1000 genomes]
rs10251197	1.00[EUR][1000 genomes]
rs10251445	1.00[AMR][1000 genomes]
rs10252560	1.00[EUR][1000 genomes]
rs10254172	1.00[EUR][1000 genomes]
rs10265238	1.00[AMR][1000 genomes]
rs10269901	1.00[EUR][1000 genomes]
rs10282218	1.00[EUR][1000 genomes]
rs10499461	1.00[AMR][1000 genomes]
rs12112997	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334082	1.00[AMR][1000 genomes]
rs12334160	1.00[AMR][1000 genomes]
rs16878257	1.00[AMR][1000 genomes]
rs16878259	1.00[AMR][1000 genomes]
rs16878263	1.00[AMR][1000 genomes]
rs17168294	1.00[EUR][1000 genomes]
rs17168300	1.00[EUR][1000 genomes]
rs17168323	1.00[EUR][1000 genomes]
rs17168342	1.00[AMR][1000 genomes]
rs17168344	1.00[EUR][1000 genomes]
rs17168348	1.00[AMR][1000 genomes]
rs17168362	1.00[AMR][1000 genomes]
rs17168385	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168392	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168394	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168404	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168412	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168423	0.92[YRI][hapmap]
rs28687851	1.00[AMR][1000 genomes]
rs28715709	1.00[EUR][1000 genomes]
rs60022106	1.00[EUR][1000 genomes]
rs60043327	1.00[EUR][1000 genomes]
rs61319951	1.00[EUR][1000 genomes]
rs6948854	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950667	1.00[EUR][1000 genomes]
rs6969161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272109	1.00[EUR][1000 genomes]
rs73272113	1.00[EUR][1000 genomes]
rs73272114	1.00[EUR][1000 genomes]
rs73272124	1.00[EUR][1000 genomes]
rs73272133	1.00[EUR][1000 genomes]
rs73272143	1.00[EUR][1000 genomes]
rs73272145	1.00[EUR][1000 genomes]
rs73272153	1.00[EUR][1000 genomes]
rs73272155	1.00[EUR][1000 genomes]
rs73272157	1.00[EUR][1000 genomes]
rs73272168	1.00[EUR][1000 genomes]
rs73287444	1.00[EUR][1000 genomes]
rs73289548	1.00[EUR][1000 genomes]
rs73289554	1.00[EUR][1000 genomes]
rs73682547	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800794	1.00[EUR][1000 genomes]
rs7802613	1.00[AMR][1000 genomes]
rs7802922	1.00[AMR][1000 genomes]
rs7811040	1.00[EUR][1000 genomes]
rs9986816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14794800-14807000	Weak transcription	HUVEC	blood vessel
2	chr7:14796000-14801800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:14799400-14802400	Enhancers	Osteobl	bone
4	chr7:14800000-14802000	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:14800000-14802600	Enhancers	Colon Smooth Muscle	Colon
6	chr7:14800200-14802800	Enhancers	Fetal Heart	heart
7	chr7:14800200-14804200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:14800400-14802600	Enhancers	Brain Germinal Matrix	brain
9	chr7:14800800-14801800	Enhancers	Brain Anterior Caudate	brain
10	chr7:14800800-14801800	Enhancers	Psoas Muscle	Psoas
11	chr7:14800800-14801800	Enhancers	NH-A	brain
12	chr7:14800800-14802000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:14800800-14802000	Enhancers	Fetal Muscle Leg	muscle
14	chr7:14800800-14802200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:14800800-14802400	Enhancers	Stomach Smooth Muscle	stomach
16	chr7:14800800-14802400	Enhancers	NHDF-Ad	bronchial
17	chr7:14800800-14802800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:14800800-14802800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:14800800-14802800	Enhancers	Fetal Stomach	stomach
20	chr7:14801000-14801800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:14801000-14801800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:14801000-14801800	Enhancers	HSMMtube	muscle
23	chr7:14801000-14802000	Enhancers	Brain Hippocampus Middle	brain
24	chr7:14801000-14802400	Enhancers	Brain Substantia Nigra	brain
25	chr7:14801200-14801800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:14801400-14801800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr7:14801400-14801800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:14801400-14802000	Enhancers	Left Ventricle	heart
29	chr7:14801600-14801800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr7:14801600-14801800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr7:14801600-14802800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:14801600-14805000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:14801600-14807800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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