Variant report
| Variant | rs10251445 |
|---|---|
| Chromosome Location | chr7:14681619-14681620 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10215386 | 1.00[AMR][1000 genomes] |
| rs10227079 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10227542 | 0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10230236 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10230627 | 0.80[AFR][1000 genomes] |
| rs10233046 | 1.00[AMR][1000 genomes] |
| rs10238594 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10250024 | 0.80[AFR][1000 genomes] |
| rs10252560 | 0.80[AFR][1000 genomes] |
| rs10265238 | 1.00[AMR][1000 genomes] |
| rs10267926 | 0.97[AFR][1000 genomes] |
| rs10282218 | 0.80[AFR][1000 genomes] |
| rs10499461 | 1.00[AMR][1000 genomes] |
| rs12112997 | 1.00[AMR][1000 genomes] |
| rs12334082 | 1.00[AMR][1000 genomes] |
| rs12334160 | 1.00[AMR][1000 genomes] |
| rs16878257 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16878259 | 0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16878263 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17168300 | 0.80[AFR][1000 genomes] |
| rs17168323 | 0.80[AFR][1000 genomes] |
| rs17168342 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17168348 | 1.00[AMR][1000 genomes] |
| rs17168362 | 1.00[AMR][1000 genomes] |
| rs17168385 | 1.00[AMR][1000 genomes] |
| rs17168392 | 1.00[AMR][1000 genomes] |
| rs17168394 | 1.00[AMR][1000 genomes] |
| rs17168400 | 1.00[AMR][1000 genomes] |
| rs17168404 | 1.00[AMR][1000 genomes] |
| rs17168412 | 1.00[AMR][1000 genomes] |
| rs28687851 | 1.00[AMR][1000 genomes] |
| rs6948854 | 1.00[AMR][1000 genomes] |
| rs6969161 | 1.00[AMR][1000 genomes] |
| rs73682547 | 1.00[AMR][1000 genomes] |
| rs7802613 | 1.00[AMR][1000 genomes] |
| rs7802922 | 1.00[AMR][1000 genomes] |
| rs9986816 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1031041 | chr7:14624127-14999201 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv538741 | chr7:14624127-14999201 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015777 | chr7:14661754-14730811 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14679200-14683200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr7:14680400-14684800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
