Variant report

Variant	rs73289554
Chromosome Location	chr7:14684452-14684453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10230627	1.00[EUR][1000 genomes]
rs10230921	1.00[EUR][1000 genomes]
rs10231244	1.00[EUR][1000 genomes]
rs10231362	1.00[EUR][1000 genomes]
rs10250024	1.00[EUR][1000 genomes]
rs10251197	1.00[EUR][1000 genomes]
rs10252560	1.00[EUR][1000 genomes]
rs10254172	1.00[EUR][1000 genomes]
rs10269901	1.00[EUR][1000 genomes]
rs10282218	1.00[EUR][1000 genomes]
rs12112997	1.00[EUR][1000 genomes]
rs17168294	1.00[EUR][1000 genomes]
rs17168300	1.00[EUR][1000 genomes]
rs17168323	1.00[EUR][1000 genomes]
rs17168344	1.00[EUR][1000 genomes]
rs17168385	1.00[EUR][1000 genomes]
rs17168392	1.00[EUR][1000 genomes]
rs17168394	1.00[EUR][1000 genomes]
rs17168400	1.00[EUR][1000 genomes]
rs17168404	1.00[EUR][1000 genomes]
rs17168412	1.00[EUR][1000 genomes]
rs28599592	1.00[EUR][1000 genomes]
rs28715709	1.00[EUR][1000 genomes]
rs59722842	1.00[EUR][1000 genomes]
rs60022106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60043327	1.00[EUR][1000 genomes]
rs61319951	1.00[EUR][1000 genomes]
rs61482057	1.00[EUR][1000 genomes]
rs6948854	1.00[EUR][1000 genomes]
rs6950667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955327	1.00[AMR][1000 genomes]
rs6969161	1.00[EUR][1000 genomes]
rs6973028	1.00[EUR][1000 genomes]
rs73272109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272113	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272114	1.00[EUR][1000 genomes]
rs73272124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272133	1.00[EUR][1000 genomes]
rs73272143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272145	1.00[EUR][1000 genomes]
rs73272153	1.00[EUR][1000 genomes]
rs73272155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272168	1.00[EUR][1000 genomes]
rs73289548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682547	1.00[EUR][1000 genomes]
rs7782685	1.00[EUR][1000 genomes]
rs7787395	1.00[EUR][1000 genomes]
rs7800794	1.00[EUR][1000 genomes]
rs7806004	1.00[EUR][1000 genomes]
rs7811040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1015777	chr7:14661754-14730811	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14680400-14684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:14682800-14685400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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