Variant report

Variant	rs7787395
Chromosome Location	chr7:14623944-14623945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10230627	1.00[EUR][1000 genomes]
rs10230921	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10231244	1.00[EUR][1000 genomes]
rs10231362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10250024	1.00[EUR][1000 genomes]
rs10251197	1.00[EUR][1000 genomes]
rs10252560	1.00[EUR][1000 genomes]
rs10254172	1.00[EUR][1000 genomes]
rs10269901	1.00[EUR][1000 genomes]
rs10279438	1.00[MEX][hapmap]
rs10282218	1.00[EUR][1000 genomes]
rs1525075	1.00[MEX][hapmap]
rs17168294	1.00[EUR][1000 genomes]
rs17168300	1.00[EUR][1000 genomes]
rs17168313	1.00[MEX][hapmap]
rs17168323	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17168344	1.00[EUR][1000 genomes]
rs17168385	1.00[EUR][1000 genomes]
rs17168392	1.00[EUR][1000 genomes]
rs17168394	1.00[EUR][1000 genomes]
rs28599592	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28715709	1.00[EUR][1000 genomes]
rs59722842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60022106	1.00[EUR][1000 genomes]
rs60043327	1.00[EUR][1000 genomes]
rs61319951	1.00[EUR][1000 genomes]
rs61482057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6461106	1.00[MEX][hapmap]
rs6950667	1.00[EUR][1000 genomes]
rs6973028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272109	1.00[EUR][1000 genomes]
rs73272113	1.00[EUR][1000 genomes]
rs73272114	1.00[EUR][1000 genomes]
rs73272124	1.00[EUR][1000 genomes]
rs73272133	1.00[EUR][1000 genomes]
rs73272143	1.00[EUR][1000 genomes]
rs73272145	1.00[EUR][1000 genomes]
rs73272153	1.00[EUR][1000 genomes]
rs73272155	1.00[EUR][1000 genomes]
rs73272157	1.00[EUR][1000 genomes]
rs73272168	1.00[EUR][1000 genomes]
rs73289548	1.00[EUR][1000 genomes]
rs73289554	1.00[EUR][1000 genomes]
rs7782685	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800794	1.00[EUR][1000 genomes]
rs7806004	0.81[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811040	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14603800-14624200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14604200-14624000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14620000-14624000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:14622400-14625000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:14623400-14624400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:14623800-14624000	Weak transcription	Liver	Liver

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