Variant report

Variant	rs10254172
Chromosome Location	chr7:14636392-14636393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10230627	1.00[EUR][1000 genomes]
rs10230921	1.00[EUR][1000 genomes]
rs10231244	1.00[EUR][1000 genomes]
rs10231362	1.00[EUR][1000 genomes]
rs10250024	1.00[EUR][1000 genomes]
rs10251197	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10252560	1.00[EUR][1000 genomes]
rs10269901	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10282218	1.00[EUR][1000 genomes]
rs12112997	1.00[EUR][1000 genomes]
rs17168294	1.00[EUR][1000 genomes]
rs17168300	1.00[EUR][1000 genomes]
rs17168323	1.00[EUR][1000 genomes]
rs17168344	1.00[EUR][1000 genomes]
rs17168385	1.00[EUR][1000 genomes]
rs17168392	1.00[EUR][1000 genomes]
rs17168394	1.00[EUR][1000 genomes]
rs17168400	1.00[EUR][1000 genomes]
rs17168404	1.00[EUR][1000 genomes]
rs17168412	1.00[EUR][1000 genomes]
rs28599592	1.00[EUR][1000 genomes]
rs28715709	1.00[EUR][1000 genomes]
rs59722842	1.00[EUR][1000 genomes]
rs60022106	1.00[EUR][1000 genomes]
rs60043327	1.00[EUR][1000 genomes]
rs61319951	1.00[EUR][1000 genomes]
rs61482057	1.00[EUR][1000 genomes]
rs6950667	1.00[EUR][1000 genomes]
rs6973028	1.00[EUR][1000 genomes]
rs73272109	1.00[EUR][1000 genomes]
rs73272113	1.00[EUR][1000 genomes]
rs73272114	1.00[EUR][1000 genomes]
rs73272124	1.00[EUR][1000 genomes]
rs73272133	1.00[EUR][1000 genomes]
rs73272143	1.00[EUR][1000 genomes]
rs73272145	1.00[EUR][1000 genomes]
rs73272153	1.00[EUR][1000 genomes]
rs73272155	1.00[EUR][1000 genomes]
rs73272157	1.00[EUR][1000 genomes]
rs73272168	1.00[EUR][1000 genomes]
rs73289548	1.00[EUR][1000 genomes]
rs73289554	1.00[EUR][1000 genomes]
rs73682547	1.00[EUR][1000 genomes]
rs7782685	1.00[EUR][1000 genomes]
rs7787395	1.00[EUR][1000 genomes]
rs7800794	1.00[EUR][1000 genomes]
rs7806004	1.00[EUR][1000 genomes]
rs7811040	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887711	chr7:14619026-14671325	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14635600-14636600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:14635800-14636600	Enhancers	HMEC	breast
3	chr7:14635800-14636800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:14635800-14636800	Enhancers	Osteobl	bone
5	chr7:14635800-14640600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:14636000-14636400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:14636000-14636400	Enhancers	NH-A	brain
8	chr7:14636000-14636600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:14636000-14638800	Weak transcription	NHDF-Ad	bronchial
10	chr7:14636200-14636600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:14636200-14636800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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