Variant report

Variant	rs17168423
Chromosome Location	chr7:14819358-14819359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10215386	1.00[AMR][1000 genomes]
rs10227079	1.00[AMR][1000 genomes]
rs10227542	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs10230236	1.00[AMR][1000 genomes]
rs10230627	1.00[EUR][1000 genomes]
rs10233046	1.00[AMR][1000 genomes]
rs10238594	1.00[AMR][1000 genomes]
rs10250024	1.00[EUR][1000 genomes]
rs10251445	1.00[AMR][1000 genomes]
rs10252560	1.00[EUR][1000 genomes]
rs10261616	0.85[MKK][hapmap]
rs10265238	1.00[AMR][1000 genomes]
rs10282218	1.00[EUR][1000 genomes]
rs10499461	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs12112997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334082	1.00[AMR][1000 genomes]
rs12334160	1.00[AMR][1000 genomes]
rs1525075	0.85[MKK][hapmap]
rs16878257	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs16878259	1.00[AMR][1000 genomes]
rs16878263	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs17168300	1.00[EUR][1000 genomes]
rs17168313	0.85[MKK][hapmap]
rs17168323	0.85[MKK][hapmap];1.00[EUR][1000 genomes]
rs17168342	1.00[AMR][1000 genomes]
rs17168344	1.00[EUR][1000 genomes]
rs17168348	0.85[MKK][hapmap];1.00[AMR][1000 genomes]
rs17168362	1.00[AMR][1000 genomes]
rs17168385	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168392	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168394	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168400	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168404	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17168412	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28687851	1.00[AMR][1000 genomes]
rs28715709	1.00[EUR][1000 genomes]
rs60022106	1.00[EUR][1000 genomes]
rs60043327	1.00[EUR][1000 genomes]
rs61319951	1.00[EUR][1000 genomes]
rs6948854	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950667	1.00[EUR][1000 genomes]
rs6969161	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272109	1.00[EUR][1000 genomes]
rs73272113	1.00[EUR][1000 genomes]
rs73272114	1.00[EUR][1000 genomes]
rs73272124	1.00[EUR][1000 genomes]
rs73272133	1.00[EUR][1000 genomes]
rs73272143	1.00[EUR][1000 genomes]
rs73272145	1.00[EUR][1000 genomes]
rs73272153	1.00[EUR][1000 genomes]
rs73272155	1.00[EUR][1000 genomes]
rs73272157	1.00[EUR][1000 genomes]
rs73272168	1.00[EUR][1000 genomes]
rs73287444	1.00[EUR][1000 genomes]
rs73289548	1.00[EUR][1000 genomes]
rs73289554	1.00[EUR][1000 genomes]
rs73682547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800794	1.00[EUR][1000 genomes]
rs7802613	1.00[AMR][1000 genomes]
rs7802922	1.00[AMR][1000 genomes]
rs7811040	1.00[EUR][1000 genomes]
rs9986816	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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