Variant report

Variant	rs1026399
Chromosome Location	chr11:106869263-106869264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10789557	0.96[ASN][1000 genomes]
rs10789558	0.83[ASN][1000 genomes]
rs10890629	0.96[ASN][1000 genomes]
rs10890630	0.96[ASN][1000 genomes]
rs11604450	0.84[ASN][1000 genomes]
rs1378529	0.96[ASN][1000 genomes]
rs1455590	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933170	0.83[ASN][1000 genomes]
rs7948216	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106861200-106869400	Weak transcription	NHLF	lung
2	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
3	chr11:106866800-106869400	Enhancers	Brain Hippocampus Middle	brain
4	chr11:106866800-106870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:106867400-106870000	Enhancers	NHDF-Ad	bronchial
6	chr11:106868000-106869400	Enhancers	Fetal Heart	heart
7	chr11:106868400-106869600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:106868600-106869400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:106868600-106870200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:106868800-106869400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:106868800-106869400	Enhancers	HSMM	muscle
12	chr11:106868800-106869400	Enhancers	HSMMtube	muscle
13	chr11:106869000-106885400	Weak transcription	Fetal Lung	lung
14	chr11:106869200-106869400	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:106869200-106870000	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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