Variant report

Variant	rs7948216
Chromosome Location	chr11:106834723-106834724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1026399	0.87[ASN][1000 genomes]
rs10789557	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10890629	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10890630	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11604450	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1378529	0.83[ASN][1000 genomes]
rs1455590	0.85[ASN][1000 genomes]
rs1471045	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106825400-106836200	Weak transcription	Fetal Brain Male	brain
2	chr11:106828400-106840200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:106830400-106841400	Enhancers	Fetal Heart	heart
5	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:106832000-106840400	Weak transcription	Ovary	ovary
7	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
8	chr11:106832200-106834800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:106832400-106839800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:106832600-106837400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:106832600-106839600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:106832600-106839600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:106832600-106839600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:106832600-106839800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:106832600-106840200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:106832800-106836800	Weak transcription	NH-A	brain
17	chr11:106832800-106840000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:106833000-106836000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:106833000-106837400	Weak transcription	Fetal Lung	lung
20	chr11:106833000-106837800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:106833800-106836200	Weak transcription	NHDF-Ad	bronchial
23	chr11:106834000-106837200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:106834600-106834800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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