Variant report

Variant	rs10789557
Chromosome Location	chr11:106847190-106847191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1026399	0.96[ASN][1000 genomes]
rs10789558	0.83[ASN][1000 genomes]
rs10890629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890630	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604450	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1378529	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1455590	0.95[ASN][1000 genomes]
rs1471045	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7933170	0.83[ASN][1000 genomes]
rs7941759	0.85[EUR][1000 genomes]
rs7948216	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10789557	KDELC2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
4	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:106841000-106847400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:106841000-106848400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:106843200-106848000	Enhancers	Fetal Heart	heart
9	chr11:106845600-106853600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:106846200-106848000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:106846400-106847400	Weak transcription	Fetal Lung	lung
12	chr11:106846800-106847200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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