Variant report

Variant	rs10264053
Chromosome Location	chr7:121472885-121472886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10225335	0.85[EUR][1000 genomes]
rs10261190	0.84[EUR][1000 genomes]
rs10264157	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278543	0.86[EUR][1000 genomes]
rs10279662	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488055	0.84[EUR][1000 genomes]
rs13230741	0.86[EUR][1000 genomes]
rs28379507	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4731039	0.84[EUR][1000 genomes]
rs4731040	0.84[EUR][1000 genomes]
rs4731041	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9655836	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10264053	PTPRZ1	cis	lung	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121470600-121473000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:121471400-121475600	Enhancers	Fetal Brain Male	brain
3	chr7:121471800-121473600	Enhancers	Fetal Lung	lung
4	chr7:121471800-121477000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:121472400-121475000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:121472600-121473800	Weak transcription	Brain Germinal Matrix	brain
7	chr7:121472600-121474400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:121472600-121474600	Enhancers	Fetal Brain Female	brain
9	chr7:121472800-121473000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:121472800-121479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links