Variant report

Variant	rs9655836
Chromosome Location	chr7:121475412-121475413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10225335	0.83[EUR][1000 genomes]
rs10261190	0.83[EUR][1000 genomes]
rs10264053	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10264157	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10278543	0.85[EUR][1000 genomes]
rs10279662	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10488055	0.83[EUR][1000 genomes]
rs13230741	0.85[EUR][1000 genomes]
rs28379507	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4731039	0.83[EUR][1000 genomes]
rs4731040	0.83[EUR][1000 genomes]
rs4731041	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7776594	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9655836	PTPRZ1	cis	lung	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121471400-121475600	Enhancers	Fetal Brain Male	brain
2	chr7:121471800-121477000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121472800-121479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:121474600-121477000	Weak transcription	Fetal Brain Female	brain
5	chr7:121474800-121476000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:121475000-121476600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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